Oryzias latipes (Japanese medaka): 101160848
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Entry
101160848 CDS
T02443
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03020
RNA polymerase
ola03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
101160848 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
101160848 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ola03021
]
101160848 (polr2a)
03400 DNA repair and recombination proteins [BR:
ola03400
]
101160848 (polr2a)
Enzymes [BR:
ola01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
101160848 (polr2a)
Transcription machinery [BR:
ola03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
101160848 (polr2a)
DNA repair and recombination proteins [BR:
ola03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
101160848 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Pullulanase_Ins
Motif
Other DBs
NCBI-GeneID:
101160848
NCBI-ProteinID:
XP_023821577
LinkDB
All DBs
Position
18:complement(14589683..14603989)
Genome browser
AA seq
1966 aa
AA seq
DB search
MHGPPSGDSACPLRTIKRVQFGIISPDELKRMSVTTEGIKYPETTEGGRPKLCGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFISKIMKVLRCVCFFCSKLLVDSN
NPKIKDILTKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGVEQQDTEEDITKEKGHG
GCGRYQPRIRRSGLELFAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDLILGMDPKF
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKMPQPAILKPRPLWTGKQIFSLIIPGHINV
IRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGENVE
FQNLASLKPSNKAFEKKFKFDCTNDRALRRVLQEDVVKDVMTNAHVQSVLEKEFDKMKED
REILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPLRVVEGVQELSKKLII
VNGDDPLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
ASHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGSVPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPLSPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSP
SYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5901 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggcgacagcgcatgcccactgcgcacgatcaagagagtacaa
ttcggcatcatcagtcccgatgagcttaaacggatgtcagtcaccactgaggggatcaaa
taccccgagacaacagaaggaggacgtcctaaactctgtggccttatggacccaagacaa
ggggtgatcgagcgctccgggagatgtcagacatgtgcagggaacatgacagaatgtcct
ggccattttgggcacatagaattggcaaagcccgttttccacgtcgggttcatatcaaag
atcatgaaggttctccggtgtgtctgcttcttctgctccaagctgttggtggactcgaat
aatcccaagatcaaagacattttgacaaaatccaaaggccagccgaggaagcgattaacc
catgtttatgagctgtgcaaaggcaaaaacatctgtgaaggaggggaggaaatggacaac
aagtttggggtggagcagcaggacaccgaggaggacattaccaaggagaagggtcacggt
ggctgtggacgctaccagcctcgcattcgccgctccggcttggagctctttgccgagtgg
aaacacgtcaacgaggattcgcaggaaaagaaaatcctgctgagtccagagcgcgtccac
gagatctttaaacgcatctcggatgaagaagacctcatcttgggcatggatcccaagttc
gctcggccagagtggatgattgtgaccgtgctgcctgtgccgccactggctgtgaggcct
gccgtggtcatgcaggggtctgctcgcaaccaggacgacttgacccacaaactggctgac
atcgtcaagatcaacaaccagctgagacgaaacgaacagagcggcgctgctgcgcacgtc
attgctgaagacgtgaagctgcttcagttccacgtcgccaccatggttgacaacgagttg
ccaggcttaccaagggcgatgcaaaagtctggccggcctctgaaatctataaagcagcgc
ctaaagggaaaggaaggccgcgtgagaggaaacctgatgggcaaacgtgtggacttctca
gctcgaactgtcatcaccccagaccctaacctgcaaatcgaccaagtgggcgtgccgcga
tccatcgcagccaacatgaccttccccgaaatagtcacgccctttaatattgacagattg
caagaactggtacggagaggcaacagtcagtatccgggcgccaaatacatcattcgggac
aacggagacagaatcgacctgcgattccatcccaaaccaagtgaccttcatttgcaaatt
ggctacaaggtggaaaggcacatgtgtgacggagacatcgttattttcaaccgacaacct
acactacataaaatgtccatgatggggcacagagtgcggattctgccctggtccacattt
cgactcaacctcagtgtcaccaccccgtacaacgccgactttgacggcgatgagatgaac
ctccacctgcctcagtcgttggagaccagagcagagatccaggagctcgccatggtgcct
cgcatgatcgtcactccgcagtcaaacaggccggtcatgggtatcgtgcaggacacgctc
acagccgtgcgcaaattcacaaagagggacgtcttcttggagaggggggaagtgatgaac
ctcctcatgttcctctccacttgggacgggaagatgccccagcccgccatcctcaagccg
cggcctctgtggacggggaagcagatcttcagcctcatcattccaggacacatcaacgtg
atccgcacgcacagcacccaccccgacgacgaggacagcgggccttacaaacacatttca
cccggagacaccaaggttatcgtggagaacggggagctgatcatggggatcctctgtaag
aagtctttaggaacttcagccggctccctggtccacatttcctacctggagatgggccac
gacatcaccagactcttctactccaacatccagactgtggtcaacaactggctgctcatt
gagggccactctatcggtattggagactccatcgctgatgcaaagacgtacctggacatc
cagaacacaatcaagaaagccaagcaggatgtgatagaagtcattgagaaggcgcacaac
aacgagctggagccaacccctggaaacactctgaggcagacctttgagaaccaggtgaac
cgcatcctcaacgacgcccgtgacaaaaccgggtcctcggcccagaagtcgctgtctgaa
tacaacaacttcaagtccatggtggtagccggctccaaaggatcaaagatcaacatctcg
caggtcatcgccgtggtggggcagcagaacgtggagggtaagcggatccccttcggcttc
aagcaccgcacgctgcctcacttcatcaaggacgactacggtcccgagagcagaggcttt
gtggagaactcctacctggcaggactcacgcccacagagttcttcttccacgccatggga
ggcagagagggtctgatcgacacagctgtcaagacggctgagaccggttatatccagcgc
cgtctgatcaaatccatggagtctgtcatggtgaaatatgatgccaccgtgcggaactcc
atcaaccaggtggtgcagctgcgttacggcgaggacggcctggcaggagagaacgtggag
ttccaaaacctggcgtctctgaaaccctccaacaaggctttcgaaaagaagttcaagttt
gattgcaccaatgaccgcgcgctgaggagggtcctgcaggaggacgtggtcaaagacgtg
atgacaaacgctcacgttcaaagcgtgctggagaaggagtttgacaagatgaaggaggac
agagagatcctcagagccatctttcccaccggagacagcaaggtggtgctgccgtgcaat
ctggccagaatgatctggaacgcccagaagatttttcgaattaaccctcgtaccccgacg
gacctgaacccgttgagagtggtcgagggggttcaggagctgagcaagaagctgattatt
gtgaacggcgatgaccctctgagtcgacaggctcaggagaacgccaccctgctcttcaac
atccacctgcgctcaacgctctgctccaagcgcatgacggaggagttccgcctctccacg
gaagctttcgattggctgttaggagagatcgagaccaagttcaaccagtccatcgcccat
ccaggcgaaatggtcggcgcgctcgccgcccagtctttaggagagccggccacacagatg
accctgaacaccttccactacgccggcgtgtcggccaagaacgtgactctgggtgtgccc
cgtctgaaggagttgatcaacatctccaagaggcccaagacgccttcgctcaccgtcttc
ctgctgggtcaggcggcacgcgacgccgagagagccaaggacatcctgtgccgactggaa
cacaccacgctgcgcaaagtgacggccaacaccgccatctactacgacccgaacccgcag
aacacggtggtggccgaggaccaggagtgggtgaacgtctactacgagatgcccgacttc
gacgtgactcggatttccccgtggctgctgcgcatcgagctcgacaggaagcacatgact
gaccgcaagctgaccatggagcaaatcgccgagaagatcaacgcaggttttggggatgac
ctgaactgtatttttaatgacgacaacgcggagaagctggtgctgcgaatccgaatcatg
aacagcgatgaaaacaagttccaggaggatgaggaggtggtggacaaaatggacgacgac
gtgtttctgcggtgcatcgagtccaacatgctgacggacatgactctgcagggcatcgag
cagatcagcaaggtctacatgcacttaccccagacggacaataagaagaagatcatcatc
accgaggacggagagttcaaggccctgcaggagtggatcctggagacggacggcgtgagc
ctcatgagggtgctgagcgagaaggacgtggatcccgtcaggaccacgtccaacgacatc
gtggagatctttacggttttggggatcgaggccgtgcggaaggcgctggagagggagttg
taccacgtcatctcctttgacggttcctacgtcaactaccgccacttggctctgctctgc
gacaccatgacctgccgcggccacctgatggccatcacgcgtcacggcatcaaccggcag
gacacgggaccgctcatgaagtgttcctttgaggaaacggtggatgtgctgatggaggcg
gcgtcccacggcgagtgtgaccccatgaagggcgtatcggagaacatcatgctgggccag
ttggccccagcggggacgggctgcttcgacttgctgctggatgcagagaagtgcaagtac
ggcatggagatcccaacaaacattcctggcatcagcgtagccggacccactggaatgttc
ttcggctccgtgccgagccccatgagcgggatgtctcctgccatgacgccttggaacaca
ggagccactccagcctacggcgcctggtcccccagtgtcggaagcggcatgactcccgga
gctgctggtttctcccccagcgcggcgtcggacgccagtggattctctcctggttactcc
cccgcctggtctcccactcctggttccccaggatccccggggccgctcagtccgtacatc
ccatctccaggcggagcgatgtcaccaaactactcgcccacctcacccgcttacgagcct
cgttccccaggaggctacacccctcagagccccggctactccccgacctccccatcctac
tccccgacctccccctcctactcccccaccagccccaactacagcccaacctctccttct
tactcacccacgtctcccagctactccccgacgtctccttcctactcgcccacgtccccc
tcctactcccctacatccccctcctactcccctacgtccccctcctactctccaacgtct
ccctcgtactctcccacctccccgagctacagcccaacgtcgccgagctacagccccaca
tcccccagctactcgcccacatccccttcttattcccccacctcaccctcttactccccc
acatctccgtcctactcccctacctccccatcctactcccccacctctccttcgtactca
cccaccagcccaagctacagccccacgtccccgaactacacccctacgtcgcccagctac
tccccaacgtctccttcctactcgcccacgtctccctcttactccccaacgtctcctaac
tacaccccaaccagtcccaactactcccctacctctccatcctattcccccacttctcca
tcctactccccctccagtccgcgctacaccccgcagtcgcccacctacacgcccagctcc
ccctcatacagccccagttctccctcatactcgcccacctcgcccaaatacacccccact
tcaccgtcgtacagcccgagctctcccgagtacacccccacctcgcccaaatactccccc
acttcaccgaagtactccccaacgtcacccaaatactcgccgacctctcccacctactcc
ccgacgactccaaagtacagccccacgtctcccacctactcccccacatcccccacgtac
acccccaccagccccaagtattccccaacctcccccacctactccccaacctcccccaag
tactcccccacatccccgacatactcgccaactagtcccaaaggctccacctacagcccc
acctcccccggctacagccccacctcccccacctacagcccggccatcagccccgacgac
agcgacgaggagaacaactga
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integrated database retrieval system
