Ostreococcus lucimarinus: OSTLU_24022
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Entry
OSTLU_24022 CDS
T01029
Name
(RefSeq) predicted protein
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
olu
Ostreococcus lucimarinus
Pathway
olu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
olu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OSTLU_24022
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
olu03021
]
OSTLU_24022
Enzymes [BR:
olu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OSTLU_24022
Transcription machinery [BR:
olu03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
OSTLU_24022
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
5000072
NCBI-ProteinID:
XP_001416093
JGI:
24022
UniProt:
A4RTE2
LinkDB
All DBs
Position
2:join(176166..180317,180516..180551)
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AA seq
1395 aa
AA seq
DB search
MPTFRDDMAGSSHDTAAIDFTKTPFAPASTPRKISAVRFSLMSSSEIGRAGVFHVFERNL
YQMPQRTPMPNGILDPRMGTTDKRGGECATCRGNMVDCAGHFGYIKLELPVFHIGYFKNI
ISVLQCVCKNCSRILLNEDDQDMFLKRYRNPRLEITQRRLLYKKLTEKCKRCRTCPHCGD
YNGVTKRAGQTLKIVHEKYSKNPALLEEFMKEFETALKYNEQLRASLPKVQDDLNPIRVL
GILQRVTSADCELLDIADRPEHLLLTHLPVPPCCIRPSVEMDGVSGSNEDDITMKLIQII
EVNNVLRQGLEKGLAVNNMMENWDFLQIQCAMYINSELPGLSLQYQGPGKPLRGFVQRLK
GKQGRFRGNLSGKRVDFSARTVISPDPNLRIDEVGVPIHIAKTMTYPEVVNKHNMVMLRE
RVRNGMAKHPGANFVKFASGGMQYLKYGDRRKIASELKFGDIVERHLHDGDILLFNRQPS
LHKMSIMAHKARIMECRTLRFNECVCTPYNADFDGDEMNIHCPQTEEARAEAMQLMGVQH
NLCTPKNGEILIAATQDFLTAAFLLTIKDAFFDRSQFGSLVAYMGDALLSVDLPTPAILK
PIELWTGKQVFSVLIRPKASDHIYVNLEVAEKLYNKKDKTMCPDDGYVCIQNSEIISGQL
GKATLGSGNKSGLFYVLNIEYGAEAAANAMNRLAKLSARWLGTRGFSIGIDDVSPAAELS
AEKGRRIEDGYRTCDERIASYEKGTLPLQAGCNAEETLEAEVLGVLSAVREAAGNACLKA
LPRRNAPLIMALCGSKGSTINISQMIACVGQQAVGGSRPPDGFAERSLPHFRRGEKTPAA
KGFVANSFFSGMRPTEFFFHTMAGREGLVDTAVKTAETGYMSRRLMKALEDLSLQYDGTV
RNSMGGIVQLRYGDDGMEPTMMESEDAQPIEFKRCLMNVRGLNSARGEPPATRSALDAAL
DQFKRNNRIINVDEEGESAETRELVYSAGISQLFYENMRTFIINEVESPSDGVYMSDRQM
KAFLDACARKYTEKRIEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIK
EIINASKNISTPIITASLMSDRDVKAARVVKGRVEKTTLGEICSEINIVVRPHDLYLELM
LDMEAINQLQLDVTIHSVRLAVLGAPKLKLKPQHVLIAGENILHVLPSEEALIEKRALFT
LQHMRLAIPAVIVQGIPSVGRAVINDKGDGTYNLIVEGVNLQSVMGIEGIKGTETRTNHV
MECERTLGIEAARACIIEEIDSTMGAHGMSIDNRHSMLLADVMTYKGEVLGITRFGMAKM
KDSVLMLASFEKTTDHLFDAALHGRTDYIDGVSECIIMGIPMPIGTGMFRLQHRAMKLEV
DINLGVSQMSRSCER
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
atgccgacgttccgggacgacatggcggggtcatcgcacgacaccgcggcgattgatttc
acgaagacgccgttcgcgccggcgtcgacgccgagaaagattagcgcggtgcggttttcg
ctgatgagctcgagcgaaatcggacgcgcgggggtgtttcacgtgttcgaacggaatttg
tatcagatgccgcagcgaacgccgatgccgaacgggatattagatccgagaatggggacg
acggataagcgcggtggggagtgcgcgacgtgtcgagggaacatggtggattgcgcgggg
cactttgggtacatcaagctggagctgccggtgtttcacatcggatactttaaaaacatc
atcagcgtgttgcagtgcgtgtgcaagaattgctcgcggattttactgaacgaggatgat
caagatatgtttttgaagcgctatcggaatccaagacttgagattacgcagaggcgtctg
ctgtacaaaaagttgacggaaaagtgcaaacgatgccgaacgtgtccgcattgcggagat
tacaacggcgtgaccaagcgtgcggggcagactttgaagatcgttcacgaaaagtatagt
aaaaacccagcgttgttggaggagtttatgaaggagtttgaaacagctttgaagtacaac
gagcagcttcgagcgtcactgccaaaggtgcaagacgatttgaatcccattcgtgtgttg
ggcatattacagcgcgtcacttcggccgattgcgaattactagacatcgcagatcgaccg
gaacacttgctcttgacgcacctgcccgttccgccgtgttgcatcaggccttcggtggag
atggacggcgtgtcagggtcaaacgaagacgatatcacgatgaagctcatacaaatcatc
gaagtcaacaatgttttgcggcaaggcttagagaaagggctcgctgttaacaatatgatg
gagaattgggattttttacagattcaatgcgccatgtacatcaacagcgagcttcccggt
ttatctctgcagtaccagggccctggtaagccgctgcgcggctttgtgcaaagactcaag
ggtaagcaagggcgcttccgcggtaacctcagcggtaagcgcgtagacttcagtgcgcgc
actgtgatctcaccagatccgaatcttcggatcgacgaggttggtgtaccaatacatata
gcgaagacaatgacatacccagaagtcgtcaacaaacacaacatggtgatgctgagagag
cgcgtgcgcaatggtatggcgaagcatcctggagcgaactttgtcaagtttgcgtctggt
ggtatgcagtacttgaagtacggcgatcgtcgcaagattgccagcgagttgaaattcgga
gacattgttgagcgacatttgcacgacggcgacattctgttgttcaatcgtcagccgagt
ttacacaagatgtcaatcatggcgcacaaggcacgtatcatggagtgccgaactctacgt
tttaacgagtgcgtgtgtacgccgtacaacgccgatttcgacggtgacgagatgaatatt
cattgccctcaaacggaagaagcgcgcgccgaagcgatgcaacttatgggagtgcaacac
aacctgtgcacaccgaaaaacggcgagattctcatcgcagcgacgcaggacttcctaact
gcagcgtttcttctcaccattaaggatgcgttttttgatcgctctcagtttggctcgctc
gtcgcgtacatgggtgatgcgctcctttccgtggatcttccgacgccagcaatcttgaaa
cccattgagctgtggactggaaagcaagtgttcagcgttctcattcgaccgaaagcgtcc
gatcacatatatgttaatcttgaagtcgctgaaaagctgtacaacaagaaggacaaaaca
atgtgtcccgacgacgggtacgtgtgcattcagaatagtgaaataatctcagggcaactc
ggcaaggcgacactcggtagtggaaataaaagtggactattctacgtgctcaacatagaa
tacggcgccgaagccgccgcaaatgcgatgaatagactcgccaagctgagcgctcgatgg
ctgggtacgcgcgggtttagcattggcatcgacgacgtctcaccggccgcggagttgtca
gccgaaaagggccgacgtatcgaggacggctacagaacttgcgacgaacgaatcgcttcg
tatgagaaaggtactttacctcttcaagcgggctgcaacgcggaggaaacgttggaggct
gaagttctcggggtcttgtctgcggtgcgcgaagccgcggggaacgcgtgtttaaaggcg
ctgccgcgtcgcaacgcaccacttatcatggctctttgcggcagtaagggtagcacgatc
aacatttctcagatgatcgcgtgtgttggtcaacaagctgtgggaggctcgcgacctcct
gacggtttcgccgagcgatcgctcccgcatttcaggcgcggagaaaagacacccgccgca
aagggctttgtcgccaactctttcttttctggcatgcgaccgacggaattcttcttccat
accatggctggtcgtgaaggtctcgtcgatactgccgtaaagactgcagagactggatac
atgtctcgtcgtctcatgaaggcgctagaggacctatcgcttcagtacgacggcactgtg
cgcaactcgatgggtggcattgtgcagctgcgctacggcgacgacggcatggaaccgact
atgatggagagtgaagacgcccaaccgatcgagtttaagcggtgtttgatgaatgtgcga
ggtctgaactcggcacgaggcgaaccgccagcgactcgctcggcgttagatgcggcgctg
gaccagttcaagcgaaacaacagaattatcaatgtcgacgaagaaggcgaaagcgccgag
acgcgcgaactcgtgtacagcgctggtatctcgcaattattctacgaaaacatgagaaca
ttcatcatcaacgaagtggagtcgccttcggatggcgtatacatgtcggatcgacagatg
aaggcatttttggacgcgtgcgcgcgaaaatacactgaaaaacgaattgagcccggcacc
gcagttggcgccattggcgcacaatccatcggcgagccaggcacacaaatgacgctgaag
acgttccatttcgccggtgtggcgtcgatgaacatcaccctcggcgttcctcgaattaag
gaaatcatcaacgcgtccaagaatatcagtacgccaatcatcacggcgtcgctcatgagc
gacagggacgtcaaggcggcgcgcgtggtgaagggtagagtggagaagacgacgttgggc
gaaatctgttccgaaatcaatattgtcgttcgtccgcacgatctttacctcgagcttatg
ttagatatggaggcgatcaatcaacttcagttggacgtcaccattcactccgtgcgcctg
gctgtgctcggggcgccaaagctcaagctcaagcctcaacacgtgctcatcgccggcgag
aatatcttgcatgtcttaccctcggaagaagcactgatagaaaaacgcgcgttgttcact
ctgcagcacatgcgactggccattcccgccgtcatcgtgcaaggcatcccatccgtcggt
cgagccgtcatcaacgacaagggcgacggaacgtacaacctcatcgtggaaggcgtgaac
ttgcagtccgtcatgggtatcgagggcatcaagggaacagagacacgaacaaaccatgtc
atggagtgtgaacgcacgctaggcatcgaagcggcgcgcgcgtgcatcattgaagagatt
gacagcacgatgggcgctcacggcatgtcaatcgacaaccgacactcgatgttgctcgcc
gacgtcatgacgtacaagggcgaggttctcgggatcacgcgtttcggcatggcaaagatg
aaagactctgtactcatgttggcttcgttcgagaaaactacggatcatctgttcgacgca
gcgctgcacgggcgcacggattacatcgacggcgtctccgagtgcatcatcatgggcatt
ccaatgcccatcggcacggggatgttccgcttgcagcaccgcgcgatgaaactcgaagtt
gacatcaacttgggcgttagccaaatgtcgcgatcgtgcgagcgatga
DBGET
integrated database retrieval system