Oenanthe melanoleuca (Eastern black-eared wheatear): 130256378
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Entry
130256378 CDS
T09236
Symbol
VCAM1
Name
(RefSeq) vascular cell adhesion protein 1 isoform X1
KO
K06527
vascular cell adhesion molecule 1
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Pathway
oma04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
130256378 (VCAM1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
oma04090
]
130256378 (VCAM1)
04091 Lectins [BR:
oma04091
]
130256378 (VCAM1)
CD molecules [BR:
oma04090
]
Proteins
130256378 (VCAM1)
Lectins [BR:
oma04091
]
I-type lectins (Siglecs)
130256378 (VCAM1)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
V-set
C2-set_2
C2-set
Ig_4
Ig_6
C1-set
Ig_C17orf99
ICAM1_3_5_D2
V-set_CD47
Adhes-Ig_like
Motif
Other DBs
NCBI-GeneID:
130256378
NCBI-ProteinID:
XP_056353931
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Position
8:8886746..8894178
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AA seq
541 aa
AA seq
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MLKEMGRTSLAVLVILCVLRTVKAFEMEIVPAEKIVAQIGDTLILTCNTTGCASPSFSWR
TQMDSPLGGKVSNYRTHSTLTMNPVSIANSHSYLCTVVCDDREKKEKSIEVELYSFPSDP
VIEISPSLVAGEQATVSCKIPDVYPSHHLEVLLKKDEHVLHEKNFFEDDSTETETKIVTH
TFHPTAKDIGKEITCVARLLIADMDFELKERTSSQKLNANFGPQNTVIAATPGNSSMEGD
TLNLTCVTQSNPPAKIVWSKYLAEESIQHLIKNNVLSIPHVHFNDSGRYICEVINPVTNK
TEKAAMDIIIQGAPVITKLSIEPSTTVQEGENVSIQCSAESNPPPKIILRRKSDNADMRP
YSARSILLPSVMFQNGGDYECLAENKFGKSKSEITLNVKYGPKNTMITVIPTAALKEGET
VTMKCTSSGNPAPVISWKKKKANGESEKISKNATFTIRNLQSQDLGLYECEAYNQFGKEE
KAVKLYVQAGLEEPDQTIPLIIAFSSVAAVVVPAVAILIYVSRQAKINGSYSLVKALRLK
V
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atgttaaaagagatgggaaggacaagcctggctgtgctagtaattttgtgtgtgttaagg
actgttaaagcttttgaaatggaaattgtacctgctgagaaaattgtggcacagattgga
gacacactcatactcacatgcaatactactggctgtgcatcaccaagtttttcctggaga
acacagatggacagcccccttggaggaaaagtcagcaactacaggacacattctacattg
actatgaatccagttagcattgcaaattctcattcttatctgtgtactgtcgtgtgtgat
gacagagagaaaaaggagaagagtatcgaagttgaactttactctttccccagtgatcct
gtcattgagatcagcccatccttagttgctggagaacaagccactgtaagctgtaaaatt
cctgatgtgtatccttctcaccacctggaagtcctcctaaagaaagatgaacatgttctt
catgagaaaaatttttttgaagatgacagcacagaaacagagaccaaaattgtgacacat
acatttcatcccacggctaaagatattgggaaagagattacctgtgtggccaggttacta
attgctgatatggattttgaactcaaagaaagaacatcttcccagaaacttaatgcaaat
tttggtccacagaatactgtcattgctgcaactccaggcaactcgtcaatggaaggagac
actctgaacctcacttgtgttactcagagtaacccaccagcaaaaatagtttggagtaaa
tatttggctgaagaaagcattcagcatctgataaaaaacaatgttctttctattccccat
gtgcatttcaatgactcaggacggtacatctgtgaagtaatcaatccagtaactaataaa
acagagaaagcagcaatggacattattatacaaggtgctccagtcattacaaaactctcc
attgaaccttctacaacagttcaagaaggagaaaatgtttccatacaatgttctgctgaa
agtaaccctcctcccaagattattttaaggagaaaatctgacaatgcagacatgaggcct
tatagtgccagaagtattcttcttccatctgtgatgttccaaaatggaggagactatgaa
tgtctagcagaaaataagtttgggaagagcaaaagtgaaatcacacttaatgtgaaatat
ggaccaaagaataccatgatcactgttatccccactgctgctcttaaagaaggagaaact
gtgacaatgaaatgtactagttctggtaatccagctcctgtgatctcctggaagaaaaag
aaggccaatggggagtctgagaaaatttctaaaaatgcaacttttactataaggaacttg
caaagtcaagatcttgggctttatgaatgtgaagcttataatcaatttggcaaggaagaa
aaagctgtgaaattatatgttcaagcaggactggaagaaccagatcagacgataccactg
atcattgcattctcatctgtagcagcagtagtggtacctgcagttgcaattttgatatac
gtgtcaagacaagcaaagatcaatggatcctacagtcttgtaaaagcactcaggttgaaa
gtttga
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