Onychostoma macrolepis: 131530647
Help
Entry
131530647 CDS
T09350
Symbol
lig1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
omc
Onychostoma macrolepis
Pathway
omc03030
DNA replication
omc03410
Base excision repair
omc03420
Nucleotide excision repair
omc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
omc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131530647 (lig1)
03410 Base excision repair
131530647 (lig1)
03420 Nucleotide excision repair
131530647 (lig1)
03430 Mismatch repair
131530647 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
omc03032
]
131530647 (lig1)
03400 DNA repair and recombination proteins [BR:
omc03400
]
131530647 (lig1)
Enzymes [BR:
omc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
131530647 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
131530647 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
131530647 (lig1)
DNA replication proteins [BR:
omc03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
131530647 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
131530647 (lig1)
DNA repair and recombination proteins [BR:
omc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
131530647 (lig1)
NER (nucleotide excision repair)
Other NER factors
131530647 (lig1)
MMR (mismatch excision repair)
Other MMR factors
131530647 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
131530647
NCBI-ProteinID:
XP_058617010
LinkDB
All DBs
Position
02:complement(28131384..28148217)
Genome browser
AA seq
984 aa
AA seq
DB search
MKTLEVHLSFFQPMKSKEKSDGQVKAKTEPVKSPLKIQNGVQESDSPVKRVHKRSRAIID
SDDEDQLIVKEQVPKQSEVEPVKSEKKPDVTKAASTPASPKTPITPTTPVTSSTSVAVVT
PASSGTPGTPATPTSTSPSGIPKRKTARKQFPKRKLESRSDGEGAKEEEKEVGEEQESKR
ARVEASPGQTDNEMEVEEKSATGKTAVEEQKEKDEAKTTAVEDNANNKMKEKDKNKVKQE
KKINGENGKKEKKDKKVKEDSSPEQADKKEKNTEEEGGSAKKKPISSFFAPRKAAVKLEK
EEGEKKKDGEISDAAEQKEKKSEKGVDSGVQSQYDPSRAHYHPIDHACWRKGQKVPYLAV
ARTFEKIEEDSGRLKNIETLSNFLRSVILLSPDDLLCCVYLCLNQLGPAYKGLELGVGET
VLMKAVAQATGRQLDKIKAEAQEKGDLGLVAESSRSNQRMMFAPANLTAGGVFNKLKEIA
NMSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGLAEQSVLTALSQAVSLSPP
GQEFPPAVLDAGKGMSAENRRVWLEEKALILKQTYCEMPNYDAIIPVLMKEGIDELPNHC
KLTPGVPLRPMLAHPTKGVGEVMKRFDEASFTCEYKYDGERAQIHILENGEVRIFSRNQE
DNTSKYPDIISRIPQVKKENVRSCVLDSEAVAWDREKKQIQPFQVLTTRKRKDVDASEIK
VQVCVYAFDLLYLNGESLVREPLSKRRDLLRESFEEKEGEFVFARSLDCDNTESIAEFLE
QSVRDSCEGLMVKTLEKHATYEIAKRSHNWLKLKKDYLEGVGDTVDLCVIGAYLGKGKRA
GSYGGFLLACYDEENEEFQSVCKIGTGFKDEDLEQHYNFLKEHILLKPRPYYRVDQSAEP
DVWLEAVQVWEVKCADLSLSPVYKAAMGLVDPEKGISLRFPRYLRIRDDKKPEDATTGSQ
IADLYKKQQQIQNQGEKQDLEDYY
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgaaaactctggaagtgcatttgtcattctttcagccaatgaaaagtaaggagaagagt
gatggacaggtcaaagcaaagactgaacctgtaaaaagtccactcaaaattcagaatggt
gtgcaggaaagcgattcaccagtaaaaagggttcataaacgcagtcgagcaatcatagac
agcgatgatgaagatcagctgatagtaaaagagcaggtgccaaaacagagtgaagttgaa
ccagttaagtcagagaagaaacctgatgttacaaaggctgcttccactccggcttctcca
aaaactcccataaccccgacgactccggtcacgtcgagtacctctgttgcggtggtaacc
cctgcttcctcaggtactccgggaactccagcaactccgacatcaacatcgccgtcaggc
attcccaaacgcaagactgcccgcaagcagttccccaagaggaagctggaaagcagaagt
gatggagagggggcaaaagaggaggagaaggaggtcggcgaagagcaggagagtaagaga
gcacgagttgaggcctcacctggacagacagacaacgagatggaggtggaagagaagagc
gcaactgggaagactgcagtggaggagcagaaagagaaggatgaagcaaaaacaaccgca
gttgaggacaatgctaacaataagatgaaagaaaaggataaaaataaggtaaaacaggag
aaaaagataaatggagaaaatgggaagaaagaaaaaaaagacaagaaagtgaaggaagat
agcagtcctgaacaagcggataaaaaagaaaaaaacacagaagaggaagggggatcggcc
aaaaagaaacccatcagcagcttttttgctcccagaaaggcagctgtcaaactggaaaaa
gaggagggtgaaaaaaagaaggatggagagatctctgacgctgctgaacagaaagagaag
aaaagtgaaaagggggtggattctggagtccagagccagtatgatccctccagagcacat
taccatcccattgaccacgcctgctggaggaagggccaaaaagtgccatatttggctgtc
gctcgcacctttgagaagattgaggaggattcgggcaggctgaagaacattgagacgctt
tccaactttctgcgatctgtcattctgctttctccagatgacctgttatgctgtgtgtac
ctgtgtctgaatcagctcggccctgcatataagggtctggagctgggtgttggggagacc
gtcctgatgaaagctgtcgctcaagcaactgggcgacagctggacaaaatcaaggcggag
gctcaggagaaaggtgacctgggattggttgctgaaagttctcgcagcaaccagagaatg
atgtttgccccggccaatctgacagcagggggcgttttcaacaaactgaaagagattgcg
aacatgagtggaaactctgcaatgaataagaagattgacattattaaaggcttgtttgtg
gcgtgtcggttttctgaggctcgatacattgtgcggtcactggctgggaagctgcggatc
ggattggctgagcagagtgttctcacggctctcagtcaggctgtgtctctgtcacccccg
ggccaagagttcccaccggctgtgctggatgcagggaaaggaatgagtgcagaaaacagg
agagtgtggctggaggagaaagcactgatcctaaaacagacatactgtgagatgccaaat
tatgatgcaatcattccagtattgatgaaggagggcatagatgaactacccaatcactgc
aagctcaccccaggtgtgcctctgcggcccatgttggctcacccgactaaaggggttggt
gaggtaatgaaacgtttcgatgaggcatctttcacctgcgagtataaatatgatggagag
agagcccagatccatattcttgagaatggagaggtgcgcatttttagccgaaaccaagaa
gacaacacaagcaaataccctgatattatttcacgaatcccacaggtgaagaaagagaac
gtacggtcctgtgttctggattcagaggcggtggcctgggacagagaaaagaaacagatc
cagccgtttcaggtcctcaccacaaggaagcgaaaggatgtggatgcatccgagatcaag
gttcaggtgtgtgtgtacgcctttgatctgctttacctcaacggagagtctctggtgcga
gagcctctaagcaaacgcagggatctgttacgggagagttttgaggagaaagaaggagag
tttgtttttgctcgatctctggactgtgacaacacggagagcattgctgagttcctggag
cagtctgtacgagattcttgtgagggcctaatggtgaagacattggaaaaacatgcaact
tatgagattgccaaacgctctcacaactggctcaagctgaagaaggactatctggagggt
gttggagacacagtggatctgtgtgtgattggtgcttatctggggaaggggaagagagca
ggcagttatggaggatttctactggcctgctacgatgaggagaatgaggagttccagtct
gtctgcaagattggaacaggcttcaaagatgaagatctggagcaacattacaatttctta
aaggagcacatcttacttaaaccacgtccatattaccgtgtggaccaatcagcagagccg
gatgtctggctggaggcggtgcaagtgtgggaggtgaaatgcgctgacctttctctgtct
ccagtctacaaggcagcgatgggattggtggacccagagaaaggcatttcacttcgtttc
ccacggtacctcaggattagagatgacaaaaagccagaggatgccaccacagggtcacag
attgcagatctttacaagaaacagcagcagattcaaaatcagggtgaaaaacaagatctg
gaggactactattga
DBGET
integrated database retrieval system
