Oryzias melastigma (Indian medaka): 112137892
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Entry
112137892 CDS
T07439
Symbol
nfkb1
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04010
MAPK signaling pathway
oml04210
Apoptosis
oml04218
Cellular senescence
oml04620
Toll-like receptor signaling pathway
oml04621
NOD-like receptor signaling pathway
oml04622
RIG-I-like receptor signaling pathway
oml04623
Cytosolic DNA-sensing pathway
oml04625
C-type lectin receptor signaling pathway
oml04920
Adipocytokine signaling pathway
oml05132
Salmonella infection
oml05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
112137892 (nfkb1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
112137892 (nfkb1)
04218 Cellular senescence
112137892 (nfkb1)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
112137892 (nfkb1)
04621 NOD-like receptor signaling pathway
112137892 (nfkb1)
04622 RIG-I-like receptor signaling pathway
112137892 (nfkb1)
04623 Cytosolic DNA-sensing pathway
112137892 (nfkb1)
04625 C-type lectin receptor signaling pathway
112137892 (nfkb1)
09152 Endocrine system
04920 Adipocytokine signaling pathway
112137892 (nfkb1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
112137892 (nfkb1)
09171 Infectious disease: bacterial
05132 Salmonella infection
112137892 (nfkb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oml03000
]
112137892 (nfkb1)
Transcription factors [BR:
oml03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
112137892 (nfkb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
Ank_2
RHD_dimer
Ank
Ank_4
Ank_3
Ank_5
Death
Motif
Other DBs
NCBI-GeneID:
112137892
NCBI-ProteinID:
XP_036069889
LinkDB
All DBs
Position
LG10:29132040..29157685
Genome browser
AA seq
928 aa
AA seq
DB search
MAGDDHYLRASNQMYGNMIMDPSWDFTHFPAMPQSTSLQTVSADGPYLQILEQPKQRGFR
FRYGCEGPSHGGLPGASSEKNRKTYPTVKICNYQGQARVVVQLVTALTPSPQLHAHSLVG
KQCDKGICIADLQSKEATISFPNLGILHVTKKNVAKTLEDRMIEAFRMGYNCSISIHPEV
DAVQGEVRVPRELSEHQRCVISSAAASQAKEMDLSVVRLMFTAFLPDSDGGFTRRLEPVV
SEPIYDSKAPNASNLKIVRMDRTAGCVTGGEEVYLLCDKVQKDDIQVRFYEEDESGLTWE
ALGDFSPTDVHRQFAIVFKTPKYRDLNLQKPTSVFVQLKRKSDNETSEPKPFTYHPQNID
KEEVQRKRQKMLPNFQDFSGHGGGGLYRGGGGSSAAAGGPGATGGGGFLQGFPGYGYGGG
GGGGFSSGYSAGLGGAMKHASQGGASDGTDGSDDSGDDGHPDDDPTSGAARRASAQRRGP
MAEEEGGVCEEQEAAKERWLVEAVWRQLGALFHFSVTGDSAYLLAPQRLLLAAQDEDGDT
GLHLAVLHGQQEALRSLTQVVTALPGDQVLNARNHLYQTPLHLAVITQQKEAVETLLWAG
ADPTATDRHGNTVVHLAAQQEGGGMVQFLLQHKELRALLEHTNTAGMCALHLAVLANQLS
SVRELLEGGANVEAQDCSCGRTALHLATETDNVSLAGCLLLEGNADVDSCTFNGSTPLHI
AAGRGSVKLTALLMAAGADPQKENSEPLFFREDPEENGCDDDGDDEDEGFIPGSTPFNMA
ASPQVLDLLNGSDYKPQSLDRTFPPPQGDLASLDSQVKLALCRALESEGCWENLAHGLGL
GILNTAFRLSPSPTKTLLDSYEVSGGTVRDLLTALRAAGGGHALSVLEEALQETPTANQT
KGSPVLDLKADVGMDSGVCDSGVELSTA
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atggctggagacgaccactacctccgtgcttctaaccagatgtacgggaacatgatcatg
gacccgtcctgggactttacgcatttccctgcaatgcctcagtccacgtctctgcaaacg
gtttcagcggatggaccgtacctgcagatcctggagcagcccaaacagcgcggtttccgg
ttccggtatggctgtgagggtccgtcccacggcggtcttcccggagcctccagtgagaag
aacaggaagacctaccccaccgtcaagatctgtaactatcagggccaggcccgggtggtg
gtccagttggtgacggcgctgacccccagcccgcagcttcacgctcacagtcttgtgggg
aagcagtgcgataaaggaatctgtatcgccgacctgcagtccaaagaagccaccatcagt
ttccctaacctggggatcctccatgtgaccaagaagaacgtggccaagactctggaggac
cgcatgatcgaagccttcaggatgggctacaactgcagcatctccatccatccggaggtc
gacgccgtgcagggggaggtccgcgtcccgcgagagctcagcgaacatcagcgctgtgtg
atcagcagcgcagcagccagccaggccaaggagatggacctcagcgtggtccgcctcatg
ttcaccgccttcctccccgacagcgacgggggtttcacccgacggttggaacccgtggtg
tccgagcccatctacgacagcaaggctccaaacgcctccaacttgaagatagtgaggatg
gaccggacggctggctgcgtgactggaggggaggaggtctacctgctctgcgacaaggtc
cagaaagacgacatccaggtgaggttctacgaagaggacgagtcgggtctcacctgggag
gctttaggagacttctcccccacagacgtccaccggcagtttgccatcgtattcaagact
ccgaagtaccgggacctgaacctgcagaagcccacgtcggtgttcgtccagctgaagagg
aagtccgacaatgagaccagcgagcccaaaccgttcacctaccacccccagaacatagat
aaggaggaggtgcagaggaaaagacagaagatgctgccgaacttccaggacttcagcggt
cacggaggaggaggtctgtaccgaggaggaggaggaagttccgctgcagcaggaggccct
ggagcgaccggagggggagggttcttacagggtttcccgggctacggttacggaggagga
ggaggaggagggttctccagcggctactcagccgggctgggaggagccatgaaacacgcc
tcgcagggcggggcttcggacggcactgacggcagcgatgacagcggcgatgacggccac
cccgacgatgaccccacctccggtgccgcccggcgagcgtcggctcagaggagaggcccg
atggctgaggaggagggcggggtctgtgaggagcaggaagcagccaaagagcgctggctg
gtggaggccgtctggaggcagctgggggcgctcttccacttctcggtcactggagactct
gcgtacctgctggctccacagcgcctgctactggcggcgcaggacgaggacggagacacc
gggctgcatctggctgtgctgcacggccaacaggaggcgctgaggagtctgacgcaggtg
gtgaccgctctgcccggagaccaggttctcaacgccaggaaccacctgtaccagactcct
ttgcacttggcggtgatcacccagcagaaggaggcagttgagacactgctctgggccggt
gccgacccgacagcgacggatcgtcatggtaacacggtggtgcacctggcagctcagcag
gaaggaggcgggatggtccagtttttactccaacacaaagagctgagagcgctgctggag
cacaccaacacagcaggtatgtgtgctctccacctggctgtcctggccaatcagctgtcg
tctgtcagagagctgttggagggcggggctaacgttgaggctcaggactgcagctgtgga
cgaacggcgctccacctcgccaccgagaccgacaacgtgtcgctcgctggctgcctgctg
ctggagggaaacgcagacgtggacagctgcacctttaatggctccacccctctgcacatc
gccgctgggcggggctccgtcaagctgacggctctattgatggctgcaggcgctgacccg
cagaaggagaactcggagccgctcttcttcagggaggacccagaagagaacggctgtgat
gatgatggtgatgatgaagatgaaggcttcatcccggggtcaactcctttcaacatggcc
gccagcccccaggttctggatctcctgaacggatcggactacaaacctcaatctctggac
agaaccttcccccctcctcagggtgacctggcgagtctggactcgcaggtgaagctggcg
ctgtgccgagctctggagagtgaaggatgctgggagaacctggctcacggtctgggtctg
gggatcctcaacacggccttccgactcagcccctcccccaccaagaccctgctggacagc
tacgaggtgtctggcgggacggtccgagacctgctgaccgctctcagagccgctggggga
ggtcacgctctgagcgtcctggaggaggcgctgcaggagacgcccacagccaatcagacg
aagggaagcccggttctggacctgaaggccgacgttgggatggacagtggcgtctgcgac
agcggcgtggaactgtccaccgcctga
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