Oryzias melastigma (Indian medaka): 112141458
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Entry
112141458 CDS
T07439
Symbol
polr2b
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03020
RNA polymerase
oml03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
112141458 (polr2b)
09124 Replication and repair
03420 Nucleotide excision repair
112141458 (polr2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oml03021
]
112141458 (polr2b)
03400 DNA repair and recombination proteins [BR:
oml03400
]
112141458 (polr2b)
Enzymes [BR:
oml01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
112141458 (polr2b)
Transcription machinery [BR:
oml03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
112141458 (polr2b)
DNA repair and recombination proteins [BR:
oml03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
112141458 (polr2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
112141458
NCBI-ProteinID:
XP_024120356
Ensembl:
ENSOMEG00000007867
LinkDB
All DBs
Position
LG10:9363841..9375311
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDQDEDNQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTAECRSCLENSSRPTSTIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNKRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLKERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMTS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtacgaccaggacgaagataaccagtatgatgaagatgatgatgaaatcactccggat
ctgtggcaggaagcatgctggatcgtcatcagctcctacttcgatgagaagggtttggtg
cggcagcagctggactccttcgatgagttcatccagatgtcggtgcagaggattgtggag
gacgcgcctcccatcgacctgcaggctgaagcgcagcacacatcgggggaggtggaggag
ccgcctcgttacctgctgaagttcgagcagatctacctgtccaagcccacccactgggag
agagacggcgcgccctcccccatgatgcccaacgaagcccggctgcggaacctcacatac
tcagcccccctgtatgtggacattacaaagaccatcattaaggaaggggaggaccagctg
cagacgcagcaccagaagaccttcatagggaaaatacccatcatgctccgctccacctat
tgtctgctgagcggcctgacggacagagacctgtgtgagcttaatgagtgtccgctggat
cccggaggctacttcatcatcaacggctcagagaaggtgttgatcgctcaggagaagatg
gccaccaacaccgtctacgtctttgccaaaaaggactcaaagtacgcgtacacagccgag
tgtcggtcctgtctggagaactcgtctcggcccaccagcaccatctgggtcagcatgatg
gccaggggaggacagggagtcaagaagagcgccatcggccagaggatcgtctccacgctg
ccgtatatcagacaggaagttcccatcatcatcgtgtttcgcgctctgggcttcgtgtct
gacagagacatcctggaacacatcatctacgactttgatgaccccgagatgatggagatg
gtgaagccttctctggatgaggcttttgtgatccaggagcagaacgtggcgctgaacttc
atcggttccagaggagccaaaccaggagtcaccaaagagcgaagaatcaaatacgcaaaa
gaagttttacagaaagagatgctgccgcacgttggagtcagcgacttctgtgagaccaag
aaggcctacttcttagggtacatggtccacaggctgttgctggctgctctgggcagacga
gagctggatgacagagatcactacggaaacaagagattggacctggctgggccgctgctg
gcctttctgttccgaggcatgttcaaaaacctgctgaaggagatcaggatctatgctcag
aagttcatcgacagaggaaaagacttcaatcttgagctcgccatcaaaactcgcatcatc
tcagacggactcaagtactctctggccactgggaactggggggacgtgaagaaagctcac
caggctcgggctggtgtgtctcaggtgctgaaccgcctcaccttcgcttccacgctgtcc
cacctccgcagagtcaactctcccatcggaagagacgggaagctggccaagcccaggcag
ctgcacaacaccctgtgggggatggtgtgtccagctgagacgccagagggtcacgccgtg
ggtctggtgaagaacttggccctgatggcctacatctctgtgggttcacaaccgtcaccc
atcctggagttcttggaggagtggagtatggagaacctggaggagatctcacctgccgcc
attgctgatgcaacgaagatctttgtgaacggctgctgggtgggaatccacaaagatcct
gagcagctcatgaacactctgagaaagctgcgccgacagatggacatcatcgtctccgag
gtgtcgatgattcgagacattcgggaacgtgagatcaggatttacacagacgctggtcgg
atctgccggccgctgctgatcgtggagaaacagaaacttctgctgaagaggcgccatatt
gaccagctgaaggagagggagtacaacaactacagctggcaggacttggtggcgagtggc
gtggtggagtacatcgacacgctggaggaggagacggtcatgcttgctatgactcctgat
gacctccaagagaagggcgtggcctattgctccacctacacccactgtgagatccacccg
tctatgatcctgggagtctgcgcttccatcatcccattccccgaccacaaccagtctccc
aggaacacgtaccaatctgctatgggtaaacaggccatgggagtgtacatcaccaacttt
cacgtgcgcatggacacgctggcacacgtgttgtactaccctcagaaaccgctggtcact
actagatccatggagtacctgcgcttcagagagctgcctgcaggaatcaactccattgtt
gcgatagcctcgtacacgggatacaaccaggaggactcggtgatcatgaacagatctgct
gtggaccgaggcttcttcaggtctgttttctaccgttcttacaaagagcaggagtctaag
aaaggctttgaccaggaggagatctttgagaaacccacacgggaaacctgtcagggtatg
aggcacgccatctatgacaaactggacgacgacggactgattgcgcccggcgttcgtgtg
tccggtgaggatgtgatcatcggtaagaccgtaacgctgccagaaaatgacgacgagctt
gacagcaccaacaagcgctacaccaagagggactgcagcaccttcctgaggaccagtgag
accggcattgtggaccaggtcatggtgactctgaaccaggaggggtacaagttctgtaag
atcagggtgcgttcggtgcgaatccctcagattggggataaatttgccagtcgacatgga
cagaagggaacctgtggaattcagtacagacaggaggacatgcccttcacctgtgagggg
atcacgcccgacatcatcatcaacccccacgccatcccgtccagaatgacagttggtcat
ttgatcgagtgtctgcagggcaaagtttctgccaacaaaggggagattggagacgccact
ccgtttaacgacgccgtcaacgttcagaaggtttcaaacctgttgtctgagtacggatac
cacctgagaggaaatgaggttctgtacaacggcttcactggaaggaagctgacctctcag
atcttcatcggccccacctactaccagagactgaagcacatggtggacgataagatccac
tccagggcccggggccccgttcagattctcaacaggcagcccatggagggccgctctcgg
gatggcggcctgcgcttcggcgagatggagcgtgactgtcagatcgctcacggagccgct
cagttcctgaaagagcgtctgtttgaggcctcagacccgtatcaggtgcacgtatgcaac
ttgtgtgggttgatggccatcgccaacacgcggacgcacacgtacgagtgccgcggctgc
cgcaacaagacccagatctctctggtccggatgccgtatgcctgcaaactgctcttccag
gaactgatgtccatgagcatcgctcctcgtatgatgacatcatag
DBGET
integrated database retrieval system
