Oryzias melastigma (Indian medaka): 112152991
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Entry
112152991 CDS
T07439
Symbol
clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112152991 (clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oml03019
]
112152991 (clp1)
Enzymes [BR:
oml01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
112152991 (clp1)
Messenger RNA biogenesis [BR:
oml03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
112152991 (clp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
MMR_HSR1
ATP_bind_1
AAA_22
TniB
nSTAND3
AAA_16
CbiA
Sigma54_activat
Motif
Other DBs
NCBI-GeneID:
112152991
NCBI-ProteinID:
XP_024138619
Ensembl:
ENSOMEG00000021303
LinkDB
All DBs
Position
LG10:complement(13288191..13291315)
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AA seq
441 aa
AA seq
DB search
MATESVEKSIDDAPANGKECTRFDLEKETELRFEVEAGEAAEQVELELLTGLAEVFGSEL
NRNKKYVFGPGSKIAVFTWQGCSVNLHGKPEVAYVSKDTPMLLYLNTHAALEQMRKQAER
ENERGPRVMVVGPTDVGKSTVCRMLLNYAVRVGRRPTLVELDVGQSGVSVPGTVSALCIE
RPADVEEGFSVQAPLVYHFGSTTPGTNIKLYNKLTSCLAEMFSQRCEVNRKASVGGCIIN
TCGWVKGSGYQALVHCASTFQVDVVLVLDHERLYNELKRDLPHFVRVVLLPKSGGVVERS
KECRRETRDEKIREYFYGFRGVSYYPFSFEVRFSDVRIYKIGAPSIPDSCLPLGMSQDDT
QLKLVPVTPGRDLTYHVLSVSSVEDGDEGARKSIVEIPVCGFIVVTYVDTQTQVMKVLSP
APRPLPRHTLLIMDIRFMDMK
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagagtctgtagaaaagagtatcgacgatgctccggcaaatggcaaagagtgc
accaggttcgacctggagaaggaaaccgagcttcggtttgaggtggaagcaggagaggcc
gcggagcaagtggagctggaactcctcaccggactggcggaagtgttcggttcagagctg
aaccgcaacaagaagtacgtgtttggaccaggatccaagatagcagtcttcacatggcaa
ggatgcagtgtgaatctgcatggaaaaccagaggtcgcctatgtatctaaagatactccc
atgctgctctacctcaacacccacgctgccctggaacagatgagaaaacaagcagaacgg
gaaaatgagaggggaccaagggtgatggttgtgggtcccacagatgtggggaagtcaacg
gtgtgtcgaatgcttctcaactacgctgtaagggttggcaggagaccaacacttgtggaa
ctggatgttggacaaagtggtgtgtccgtgccggggacggtgtcagcgctgtgcattgag
cggccagcagacgtggaagagggcttctctgtccaggctcctttggtttatcactttggc
tccaccactccaggcaccaatattaaactgtacaacaagctgacatcctgccttgctgag
atgttttcccagcgctgtgaggtaaacaggaaggccagtgttggaggatgcatcatcaac
acctgcggctgggtgaaaggttcaggataccaggctttggtccactgtgcctcaaccttt
caggtggatgtggtgctggttttggaccacgagaggctctacaatgagcttaaacgtgac
ctgcctcacttcgtgcgagttgtgctccttcccaagtctgggggagtggtggaacgctcc
aaggagtgccggcgggaaaccagggatgaaaagatccgcgagtatttctatggattccgt
ggagtgtcctactaccccttttcctttgaggtgcggttctctgacgtccgcatttacaaa
atcggtgcaccgtccatcccagactcgtgcttacctttagggatgtctcaggacgatacg
cagctaaagctggtgcctgtcacaccaggaagagacctgacgtaccacgtgctgagcgtg
agcagcgtcgaggacggagatgaaggagccagaaagagcatcgtggagattcctgtgtgt
ggttttattgtggtaacttatgttgacactcagacacaggtgatgaaagtgttgtcccca
gcacccagaccactgcccagacatactctgcttatcatggacattcgctttatggacatg
aagtaa
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