Oryzias melastigma (Indian medaka): 112154295
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Entry
112154295 CDS
T07439
Symbol
polr3a
Name
(RefSeq) DNA-directed RNA polymerase III subunit RPC1
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03020
RNA polymerase
oml04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
112154295 (polr3a)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
112154295 (polr3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oml03021
]
112154295 (polr3a)
Enzymes [BR:
oml01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
112154295 (polr3a)
Transcription machinery [BR:
oml03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
112154295 (polr3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF3654
Motif
Other DBs
NCBI-GeneID:
112154295
NCBI-ProteinID:
XP_024140911
Ensembl:
ENSOMEG00000012865
LinkDB
All DBs
Position
LG19:11597154..11616766
Genome browser
AA seq
1390 aa
AA seq
DB search
MVKEQFRETDVAKKISHICFGMKSAEQMRQQAHIQVVSKNLYSQDTKHTPLPYGVLDHRM
GTSEKDRPCLTCGKNLADCLGHYGYLDLELPCFHVGYFKAIIGILQMICKTCSSIMLTKE
EKVQFLDHLKRPNLAYLQKRGLKKKISEKCRKRTVCLNCSAFNGTVKKCGLLKIIHEKYK
TTKKVVDPFVSEFLQSFDTAIEHNKLIEPLLNRAQENLNPLVVLNLFRRIPDEDVPLLLM
NPEAGKPADLIITRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMSG
AKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKR
VDFSGRTVISPDPNLRIDEVAVPVHVAKILTYPEMVNKANLELMRKLVRNGPDVHPGANF
IQNRRNQIKRFLKYGNREKIAQELRFGDVVERHMIDGDIVLFNRQPSLHKLSIMAHIARV
KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALILMGTKANLVTPRNGEPLIA
AIQDFLTGAYLLTLKDTFFDRSKACQIVASILVGKDEKVRISLPHPAIVKPMALWTGKQI
FSMILKPSKDCPVKANLRTKGKQYCGKGEDLCHNDSFVVIHNSELMCGSMDKGTLGSGSK
NNIFYILLRDWGQLEAANAMSRLARLAPVFLSNRGFSIGIGDVTPGHGLLKAKQDLLDDG
YTKCDEYIEALKTGKLQQQPGCTAEETLEALILRELSVIRDRAGSACLRELDKSNSPLIM
ALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVADSFYS
GLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSMGDIIQF
IYGGDGLDPAAMEGKDEPLEFKRVLDNIRAVYTCPDEPALSQNELVLTSDAIMKRADFLC
CRDSFLEEIKKFIKSMSDRIKKTRDKYGINDNGTSEPKVLYQLDRITPTQLEKFLETCRD
KYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKNI
STPIITAHLDVEDDADFARLVKGRIEKTLLGEISEYIEEVFLPDDCFILVKLSLDRIRLL
RLEVNAETVRYSICMSKLRVKPGDIAVHGEAVVCVSPRENNKSSMYYVLQSLKEELPKVV
VQGIPEVARAVIHIDEQSGKNKYKLLVEGDNMRAVMATHGVKGSRTTSNNTYEVEKTLGI
EAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMSYKGEILGITRFGLAKMKESVLMLAS
FEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKADKDPTPVTRPLLFD
HKDFHIPLFT
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaggagcaattccgagagacagacgtggctaaaaaaataagccacatctgcttt
gggatgaaatctgctgagcagatgcgtcagcaggcccacatccaggtggtcagcaagaac
ctgtacagccaggacaccaaacacaccccactgccctatggagtactggatcaccgcatg
gggacaagtgagaaagacagaccatgcttgacttgtgggaagaacctggcagattgtttg
gggcattatgggtatttggacctggaactgccttgttttcatgtcggttatttcaaagcc
attataggaatactacagatgatttgcaagacctgctccagtataatgctgacaaaagaa
gaaaaagtccagtttctggatcacttgaaacgaccgaacctggcttatctccagaaacga
ggcttgaagaagaagatttcagagaaatgccgcaaaaggacagtctgtttgaattgttct
gcatttaatggaactgttaaaaagtgtggcctgttgaagatcatccatgaaaaatataaa
acaaccaaaaaagtggtggatccatttgtgtcagagttcctgcagtccttcgatacggcc
atcgaacacaacaaactgatcgaacctctgttgaaccgagcacaggaaaacctgaacccc
ctggtggtcttgaatctgttcaggaggattccagatgaagacgtccctctgctgctgatg
aacccggaagcaggcaaacccgcagacctcatcatcacccgactgctcgtgcctcctctc
tgcatccggccgtctgtggtcagcgacctcaagtcgggcaccaacgaagacgacctcacc
atgaagctgacagagatcatcttcctcaacgatgtcatcaaaaagcatcgcatgagtgga
gcaaaaacccagatgatcatggaggactgggacttcctccagctgcaatgcgcactttac
ataaatagtgaactttctgggatcccgctcaatatggcgccaaagaaatggacgagagga
tttgtgcaaagactcaaaggaaaacaaggtagattcagaggaaacctctcgggtaaaaga
gtggacttctcaggaagaacagtcatttctccggaccccaacctgaggatcgatgaagtg
gcggttccggtccacgtggctaaaatcctgacatatccagagatggtgaacaaagccaac
ctggagctgatgagaaaactggttcggaacggccccgacgttcaccccggagccaacttt
atccagaaccgccgcaatcagatcaaacggtttttgaaatatggaaaccgggaaaaaata
gctcaggagttgaggtttggtgacgtggtggaaagacacatgatagacggagacatcgtc
ctcttcaatcggcagccatctttgcacaaacttagcatcatggcccacatagccagagtc
aaaccacaccgaacgttccgctttaacgagtgcgtttgtactccctacaacgccgatttt
gacggcgatgaaatgaatctgcatcttcctcaaacagaagaagccaaagcggaggctctg
attctgatggggaccaaagctaatcttgtcactcccagaaacggggaacctctgattgct
gctattcaggactttttgacaggtgcttatttgttgacgctgaaggacaccttcttcgat
cgatcaaaagcctgccagatagtggcatcaatccttgtgggcaaagatgaaaaagtcaga
atctcgttacctcacccagcgattgtaaagccgatggctttgtggacgggcaaacagatc
ttcagtatgatcctgaagccgagtaaggattgtccagtgaaggccaacctgcggacaaaa
ggcaaacagtactgtggcaaaggagaggatctgtgtcacaacgactcatttgtggtgatt
cacaacagtgagctgatgtgtggcagcatggacaaaggcaccttgggatccggatccaag
aacaacattttctacatcttgctgagagactggggacagctggaggccgcaaacgctatg
tcacgtctggccaggctcgctccagtctttctctccaacagaggattctccattggaatt
ggcgatgtgactcctggccacggtctgctgaaggccaagcaggacctgctagacgacggc
tacacgaagtgtgatgaatacatcgaagctttgaagacggggaaattacagcagcagcct
ggctgcactgcagaggagacgctggaggctctcatcttgagggagctttccgtgatcaga
gaccgagctggcagcgcctgcctcagggagctggacaagagcaacagcccactcatcatg
gctctttgtggatccaaaggttccttcattaacatttctcagatgattgcgtgcgtgggc
cagcaggccataagtggctctcgagtccccgacggctttgagaaccgttctctgcctcac
tttgaaaaacactcaaaactgcctgctgccaagggctttgtggctgatagcttctattcc
ggtctgactcccactgagttcttcttccacaccatggcgggccgagagggtctggtggat
actgctgtgaaaacggccgagaccggatacatgcagaggcgtctggtgaagtccctcgaa
gatctgtgctcgcagtacgacctgacggtgcgcagctccatgggcgacatcatccagttc
atatacggcggcgacggtctggacccggctgccatggagggaaaggacgagcctctggag
ttcaagagagtgctggacaatatccgggcggtctacacgtgcccggatgagccggcgctc
agtcaaaacgagctggtcctcacttcagacgccatcatgaaacgagccgacttcctgtgc
tgcagagacagcttcttggaggagatcaaaaagttcattaagagcatgtcagatagaatc
aagaagaccagagacaagtacggcatcaacgataatgggacaagcgagcctaaggttctg
tatcagctggaccggatcacaccgactcagctggagaagtttctcgaaacctgcagagac
aagtacatgagagcccagatggagccgggctcagcagtgggggctctgtgtgctcagagc
atcggggagcccggcactcagatgaccctgaaaacctttcactttgccggcgtggcgtcc
atgaacatcactctgggggtgcctcgcatcaaagagatcatcaacgcttccaaaaacatc
agtacccctataatcactgctcatttggatgttgaagacgacgccgactttgcaaggctg
gtgaaaggaaggattgagaaaactcttcttggagagatttccgagtacattgaagaagtt
tttcttccggatgactgcttcatcctggtgaaattgtctctagacagaatacggctgcta
agattggaggtgaacgctgaaacggtgcgttattccatctgcatgtccaagctgcgcgtc
aagcccggagacatcgccgtgcacggcgaggcagtggtttgcgtgtcgccgcgagagaac
aacaaaagctccatgtactatgtgctgcagtcattgaaagaagaacttcctaaggtggtg
gttcaaggaatccccgaagtggcccgagcggtcatccacattgacgaacagagtggcaag
aacaagtacaaactgctggtggagggggacaacatgagagctgtcatggccactcatgga
gtgaaggggagcagaactacttcaaacaacacctatgaggtggagaagactttaggcatc
gaggccgcccgctccaccatcattaatgagattcagtacactatggtgaaccacggaatg
agcatcgaccggcggcacgtcatgctgctcgcagatttgatgtcttataagggggagatt
ttaggaatcaccagattcggattggcaaagatgaaggagagcgtcctcatgctggcctcc
tttgagaaaaccgccgaccatctgtttgacgctgcctactttggacagaaggactctgtc
tgcggagtgtctgagtgcatcatcatgggaattccaatgaacattggaacaggactcttc
aagctgctgcacaaagctgacaaggatcccactcctgtcacaaggccacttctgtttgac
cataaggacttccatatacctctgttcacatag
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integrated database retrieval system
