Oryzias melastigma (Indian medaka): 112159958
Help
Entry
112159958 CDS
T07439
Symbol
scn1lab
Name
(RefSeq) sodium channel, voltage-gated, type I like, alpha b isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
oml04040
]
112159958 (scn1lab)
Ion channels [BR:
oml04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
112159958 (scn1lab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
ATP-synt_B
GPHH
IQ
Spem1
Zip
IQCJ-SCHIP1
FUT8_N_cat
Motif
Other DBs
NCBI-GeneID:
112159958
NCBI-ProteinID:
XP_024149996
Ensembl:
ENSOMEG00000002647
LinkDB
All DBs
Position
LG2:complement(10156030..10202303)
Genome browser
AA seq
2024 aa
AA seq
DB search
MAQLLVPPGPDSFRPFVPESLAAIERRIAEEEAKRPRAERRSDSDDENGPKPNSDLEAGK
SLPFIYGDTPSHLVSTPLEDIDPFYSNQKTFIVLNRGKAIFRFNATSALYILTPFNPLRR
IAIRVLVHSMFSMLIMFTILTNCAFMTLSSPPDWAKNVEYTFTGIYTFESLIKILARGFC
VGKFTFLRDPWNWLDFSVILMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGA
LIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRQKCVRMYTPGNATNSSLIANDTMYY
NGSLSGFNLSFVENATESTFNWTEYISDESNYYYLPGRRDALLCGNGSGAGLCPEGFVCI
KAGRNPDYGYTSFDTFSWAFLSLFRLMTQDYWENLYQQTLRAAGKPYMIFFVLVIFLGSF
YLVNLILAVVAMAYDEQNQATIEEAQQKEEEFQAMLEQLKRQQEEAQVAAAAATESGEYS
GRGDPTSESSSGTSKLSSKSAKERRNRRKKRKQREEEEEREGRDKFHKSESEDSIKRSTF
RFSIDANRLSYEKRCSSPNQSLLSVRGSIFSPRRNSRASLFSFRGRARDMGSENDFADDE
HSTFEEADSRRGSLFLPRRTERRCSVVSQTSLGAPRIMLPANGKMHCTVDCNGVVSLVGG
TSVTTSPVGLLQPEGTTTDTELKKRRSGFHQPSMDYLDEPGPRQRAMSMGSILTNTMEEL
EESRQKCPPCWYRFANMCLIWDCCPAWLKIKEVVSTVVMDPFVDLTITICIVLNTLFMAM
EHYPMTKEFDNVLSVGNLVFTGIFTAEMCLKIIALDPYYYFQQGWNIFDGIIVSLSLMEL
GLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVV
GMQLFGKNYKECKCKISQDCELPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQTM
CLIVFMMVMVIGNLVVLNLFLALLLSSFSADNLAATDEDSEMNNLQIAVGRIQRGFAFVK
KKVRQLLRSLCFCGAGKGSGLVEESKPLDELHSNGKGNCISNHTSLEITKDGTGVYMMEG
NGRPGGGLVVGVVGGDTTGKYPVEESDYMSFIHNPSLTVTVPIAVGESDFENLNTEDFSS
DSSDVEGSKEKIDVEPQPLSSSEGSTVDIRPPGDGVDSVELEPEESLDPEACFTEGCVSR
FQCCQVDEEGNHFKSWWTLRKTCFIIVEHNWFESFIIFMILLSSGALAFEDVYIEQRRTI
KTVLEYADKVFTYVFILEMLLKWVAYGFVKYFTNAWCWLDFLIVDVSLVSLVANALGYSE
LSAIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNL
FAGKYYHCINTTTEEMFPIEVVNNKTECLLLVNDSARWKNVKINFDNVGAGYLALLQVAT
FKGWMDIMYAAVDSRDLEDQPQYEVNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQK
KKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPANAFQGCVFDCITKQAFDIVIMIL
ICLNMVTMMVETDDQTKEMDNILYWINLVFIVLFTGECVLKIISLRHYYFTIGWNIFDFV
VVILSIVGMFLSEVIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPAL
FNIGLLLFLVMFIYAIFGMSNFAYVKKESGIDDMFNFETFGNSMICLFQITTSAGWDGLL
APILNKREPDCDSQLEHPGNNYKGNCGNPSVGIFFFVSYIIICFLIVVNMYIAVILENFS
VATEESAEPLSEDDFEMFYEVWERFDPDATQFVEYCKLSDFADALDPPLRIPKPNMIQLV
QMDLPMVSGERIHCLDILFAFTKRVLGEGGEMDVLRGQMEERFMASNPSKVSYEPITTTL
RRKQEEMSAIIIQRAFRRYLIRQAMKKASAMYKEKLKDGIRDPDKDVMVISKFNENSTSD
KTDMTPSTASPPSYNSVTKSDKDKYEKENREKENKGKDFKDRKK
NT seq
6075 nt
NT seq
+upstream
nt +downstream
nt
atggcacagctgcttgtaccgcccggacctgacagcttccgtcccttcgtccccgagtcg
ctggccgccatcgagaggcgcatcgccgaggaggaggccaagagaccgcgggcggagcgc
cgcagtgacagcgacgatgaaaacgggcccaagcccaacagcgacctggaggcggggaag
tctctgcctttcatctacggggacaccccttcacacctggtgtcgaccccgctggaggac
atcgaccccttttacagcaatcagaagaccttcatagtgttgaatcgtgggaaggcgatc
ttccgtttcaatgccacttctgccttgtacatcttaactcccttcaatcctctgcgaagg
atagctattagagttttggtgcactcgatgttcagcatgttgatcatgttcaccatcttg
accaactgtgcttttatgaccctaagttctcccccggactgggccaagaatgtagagtac
acattcacagggatttacaccttcgagtcccttataaagatcctggccaggggcttttgc
gtggggaagttcaccttcctgcgggacccatggaactggctggatttcagtgttattctc
atggcatatgtcacagagtttgtggacctgggcaatgtctcagcactgcgaaccttcagg
gttctgcgagcgctgaaaacaatatcagtcatcccagggttaaagaccatcgttggcgct
ctgatacagtctgtgaagaagctgtcagacgtgatgattctcaccgtgttctgcctcagc
gtctttgccctgatcggcctgcagctcttcatgggcaacctgaggcagaagtgcgtgcgc
atgtacacgcccggtaatgccaccaacagcagcctcatcgcaaacgacaccatgtactac
aacggcagcctgtcaggcttcaacttgtccttcgtggagaacgccaccgagagcaccttt
aactggacggagtacatcagcgatgaaagtaattactattacctccctggccgaagggat
gctctgctctgtggaaatggcagtggtgcaggactttgtccagaaggctttgtgtgcatc
aaagcgggtcgtaatccagactacggctacaccagttttgacaccttcagctgggccttc
ctctcccttttccggctaatgacccaggactactgggaaaacctctaccaacagacctta
cgagcagcggggaagccctacatgattttctttgtcctggtgatattcctgggctccttc
taccttgtcaacctgattctggctgtggtagccatggcttacgacgaacagaaccaggcg
accatcgaggaggctcagcagaaggaggaggagttccaggccatgctggagcagctgaag
aggcaacaggaagaggcgcaggttgccgcggcagcagccaccgagagcggcgagtacagc
gggagaggggaccccacctccgagtcctcctcggggacgtcgaagctgagctccaagagc
gccaaggagcgccgcaacaggcggaagaagaggaagcagagggaggaggaggaggagagg
gagggccgcgacaagttccacaagtccgagtctgaggacagtatcaagaggtccaccttc
cgcttctccatcgatgccaacaggctgtcttatgagaaaagatgctcatccccaaaccag
tcccttctaagtgtccgtggctccatcttctcacctcggaggaacagtcgtgccagcctc
ttcagcttccgcggaagggcgcgcgacatgggctcagagaacgactttgcagatgacgag
cacagcacgttcgaggaagccgacagtcgccggggctccttgttcttgccacgtcgcact
gaacgtcgctgcagtgtcgtcagtcagaccagcctgggggcaccgcggatcatgctacct
gccaacggcaagatgcactgcaccgtagactgcaacggcgtggtgtcgctggtcggagga
acgtctgtcacaacttctcctgtaggtcttctgcagcctgagggaacaacaacagatact
gagctgaaaaagcgaagatcaggatttcatcagccatctatggactatttagacgaacct
ggaccccgacagcgagccatgagcatgggtagcatcctcactaacactatggaagagctg
gaggagtcaagacagaaatgcccgccttgctggtatagattcgcaaacatgtgtctaatc
tgggattgctgtcccgcatggttaaagatcaaagaggtggtcagcacggtggtcatggac
ccatttgtggatctgaccatcacaatttgcatcgtcctcaacaccctgttcatggcgatg
gagcattaccccatgactaaggagtttgacaacgtgctgtcagtcggaaacctggtgttc
actggcatcttcacagcagagatgtgcctcaaaatcattgctctggatccttactactac
ttccagcagggctggaacatcttcgatggcattatcgtcagtctcagtcttatggagctt
ggcttggcaaatgtagaaggcctgtcagtgctcaggtcctttcgattgctgagggttttc
aagttggccaagtcatggcccacactgaacatgctgatcaagatcatcggaaactctgtg
ggcgctctgggcaacctgacccttgtgttggctataattgtgttcatcttcgccgtggtg
ggcatgcaactgttcggcaagaactacaaagagtgcaaatgcaaaatttcacaagactgc
gagttgcctcgctggcacatgcacgacttcttccactcctttctcattgtgttccgggtg
ctgtgcggagaatggatagagaccatgtgggactgcatggaggtggcaggacagacaatg
tgtctgattgtcttcatgatggtcatggtcattggaaatcttgtggttctgaacctgttc
ttggctctcctcctgagctcattcagtgctgacaacctggccgcaacagatgaggacagc
gagatgaacaacctgcagatcgccgtgggccgcattcagaggggctttgcgtttgtcaag
aaaaaggtgcggcagctgctgcggagcctgtgtttttgtggcgccggtaaaggctccggc
ttggtcgaggagagcaagcctctggatgagctgcacagcaatggcaaagggaactgcatt
tccaaccacacctctctggagatcaccaaagacgggaccggagtgtacatgatggaaggg
aacgggaggccaggaggaggcctggtggttggtgttgttggtggggacactactgggaag
tacccagtggaggaaagtgactacatgtccttcattcacaacccaagcctcacggtcact
gtgccgatcgcagtgggagagtcagactttgagaacttaaatactgaggatttcagcagc
gactcgtctgatgtggagggcagcaaagagaagattgacgtggaaccccagcctctgagc
tcctcagaggggagcacagttgatattcgacccccaggagatggggttgattcggtggag
ctggagccggaggagtcattggacccagaggcctgctttacagaaggctgtgtgagcaga
ttccaatgctgccaggttgatgaggaagggaaccattttaagagctggtggacactcagg
aaaacctgctttatcatagtggagcacaactggtttgaatccttcattatcttcatgatc
ctgctaagtagtggagctctggcatttgaggatgtctatatcgagcagagacgaaccata
aaaacagtgctggagtatgcagacaaagtcttcacttatgtcttcatattggaaatgctg
ttgaagtgggtggcgtatggttttgttaagtacttcaccaatgcttggtgctggctggac
ttcctcattgtagatgtgtccttggtcagccttgtggctaatgctctgggttactctgag
cttagtgccatcaaatctctgcggacgctacgagctctccggccccttagggccctgtct
cgatttgagggcatgagggtggtggtgaacgcccttctgggagccatcccctccatcatg
aacgtgctcctggtgtgcctcattttctggctcatcttcagcatcatgggcgtcaatttg
tttgccggaaaatactaccactgcatcaacaccaccacagaggaaatgtttcccatcgaa
gtagtcaacaacaagacggagtgcctgctgctggtcaacgatagcgctcgctggaaaaat
gttaagatcaacttcgacaacgtgggagccggttatctcgctttgttgcaagtggcaaca
tttaaggggtggatggacatcatgtatgcagctgttgactccagagatttggaggatcag
cctcagtatgaagtgaacctgtacatgtacctctacttcgtcattttcatcatctttggc
tccttcttcaccctcaacctcttcattggtgtcatcattgacaacttcaaccagcaaaag
aagaagttgggaggtcaggacatcttcatgacagaagaacagaagaaatattacaacgct
atgaagaaactgggttccaagaaaccacaaaaacctattcctcgtccagcaaacgcattc
caaggctgtgtgtttgactgcatcacaaaacaggcctttgacattgtgattatgatcctt
atctgccttaatatggtgaccatgatggttgagacggacgaccagacgaaggagatggac
aacatcctctattggatcaacctggttttcattgtgctctttactggggaatgtgttctc
aagataatctctctgcgccactactacttcactattggctggaacatctttgattttgtg
gtggtgattctttcgattgtaggtatgtttttatctgaagtcatcgaaaagtactttgtg
tccccaaccctgttccgagtgatccgactagcaaggataggtcggatccttcgtcttatt
aaaggcgccaagggcatccggacgcttctctttgccttgatgatgtccctccctgccctg
tttaacataggccttctccttttcctggtcatgttcatctatgccatctttgggatgtcc
aactttgcgtatgtgaagaaggagtctgggatcgacgacatgttcaacttcgagaccttt
gggaacagtatgatctgcttgtttcagatcaccacctctgctgggtgggatggccttcta
gccccaatattgaacaaaagggagcctgactgcgacagccaactggagcacccaggcaac
aactacaaaggcaactgtggcaacccatcagtcggcatattcttctttgtcagctacatc
ataatttgctttctcattgtggtcaacatgtacattgctgtgatcctggagaacttcagt
gtggccacagaggagagcgctgagcctctaagtgaggatgattttgaaatgttttacgag
gtgtgggaacgctttgatccggacgccacacagtttgtggagtactgtaagctctctgac
tttgcagacgctctcgatccaccactgcggatacccaagcctaacatgatccagctggtt
caaatggatctgccgatggtaagtggcgaacggatccactgccttgacatcctctttgct
ttcaccaagagagtcttgggtgaagggggcgagatggacgtgttacgagggcagatggaa
gagcgcttcatggcttccaacccatcgaaggtgtcttacgagcccatcactaccacgctg
cgtcgcaagcaagaggaaatgtcggccattattatccagagagccttccgccgctacctg
atccgccaggccatgaaaaaggcctccgccatgtacaaggagaagctgaaggacggcatt
cgagatccagacaaagacgtgatggtcataagcaagtttaacgagaactccacgtccgat
aaaacagacatgacgccttctacggcttccccgccctcctacaacagtgtgaccaagtca
gacaaggacaaatacgaaaaagaaaatagagaaaaggaaaacaaaggaaaagactttaaa
gacagaaagaagtaa
DBGET
integrated database retrieval system
