Oncorhynchus mykiss (rainbow trout): 110500684
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Entry
110500684 CDS
T07259
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03020
RNA polymerase
omy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
110500684
09124 Replication and repair
03420 Nucleotide excision repair
110500684
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
omy03021
]
110500684
03400 DNA repair and recombination proteins [BR:
omy03400
]
110500684
Enzymes [BR:
omy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
110500684
Transcription machinery [BR:
omy03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
110500684
DNA repair and recombination proteins [BR:
omy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
110500684
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
110500684
NCBI-ProteinID:
XP_036814029
Ensembl:
ENSOMYG00000031498
LinkDB
All DBs
Position
21:complement(51274377..51298543)
Genome browser
AA seq
1970 aa
AA seq
DB search
MHGPPSGDSACPLRLIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFVNKIMKVLRCVCYSCSKLLVDTN
NPKIKDILQKSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGVDQQEHDSEDITKEKGH
GGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVYEIFKRISDEEDVILGLDPK
FSRPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAH
VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF
SARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIR
DNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIIFNRQPTLHKMSMMGHRVRILPWST
FRMNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT
LTAVRKFTKRDVFLERGDVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHIN
AIRTHSTHPDEEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHICFLEMG
HDVTRLFYSNIQTVVNNWLLIEGASIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAH
NNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINI
SQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAM
GGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAV
EFQNMATLKPSNKAFEKKFRFDCTNERALRRTLQEDVVKDVMTNAQVQSALEREYEKMKE
DREILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPLRVVEGVQELSKKLV
IVNGEDHLSRQAQQNATLLFNIHLRSTLSSRRMTDEFRLSTEAYDWLLGEIESKFNQSIA
HPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTV
FLLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVTEDQEWVNVYYEMPD
FDVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRI
MNSDENKFHEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKII
ITEEGEFKALQEWILETDGVGLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERE
LNHVISFDGSYVNYRHLSLLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLME
ASSHGESDPMKGVSENIMLGQLAPCGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGM
FFGSAPSPMSGMSPAMTPWNTGATPAYGAWSPSIGSGMTPGAAGFSPSAASDASGFSPGY
SPAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPS
YSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPSSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTS
PSYSPSSPRFTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYS
PTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSP
KYSPTSPTYSPTSPKGSTYSPLSPGYSNPSPSFTLTSPAISPDDSDEENN
NT seq
5913 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggcgacagcgcatgcccattgcgcctcatcaagagagtgcaa
ttcggcatcatcagcccagatgagcttaaacggatgtcggtcacagaagggggaatcaag
taccccgagaccacagaaggaggacgtcctaaacttggtgggctgatggaccccagacaa
ggggtcatcgaacgatccggaaggtgtcaaacatgtgcaggcaacatgacagaatgcccg
ggccacttcggccacatagagctggcgaagcctgtcttccacgtgggtttcgtcaacaag
atcatgaaggtcctccgatgtgtctgctactcgtgctccaagcttctggtcgacacgaat
aacccaaagatcaaagacatcctgcagaagtccaaggggcagcccaggaagcgtctgacc
cacgtgtacgacctgtgtaaaggcaagaacatctgcgagggcggagaggagatggacaac
aagtttggagtggaccagcaggagcacgacagtgaggacatcactaaggagaaggggcac
ggtggctgtgggcgctaccagccgcgtatccgccggtcgggcctggagttgtacgctgag
tggaagcacgtgaacgaggactcgcaggagaagaagatcctgctgagcccagagcgcgtc
tacgagatcttcaagcgtatctcggacgaggaggatgtcatcctgggcttggaccccaag
ttctcccggcccgagtggatgatcgtcacagtactccccgtgccaccactggctgtccgg
cccgccgtcgtcatgcagggctctgctcgtaaccaggacgacttgacacacaagctggcc
gacatcgtcaagatcaacaaccagctgcggcggaacgagcagagcggcgcggcggcccac
gtcatcgccgaggacgtgaagctgctgcagttccacgtggccaccatggtggacaatgaa
ctgccaggcctgcccagggcgatgcaaaaatcgggccgcccacttaaatccctcaaacag
cgtctgaaggggaaggaggggcgagtccgaggtaacttgatggggaaacgtgtggacttc
tccgcccgaaccgtcatcacccccgaccccaacctccagatcgaccaagtgggtgtcccg
cgctccatcgcagccaacatgaccttcccagaaatcgtcacaccctttaacattgacagg
ttacaggagttggtgcgcagaggcaacagccagtaccccggagccaaatatatcatccgc
gacaacggggacagaatcgacctgcggtttcaccccaaaccaagtgaccttcacctgcag
atcggctacaaggtggaaagacatatgtgcgacggtgacatcatcatcttcaacagacag
cccacgctacataaaatgtctatgatggggcacagagtccgaatcttgccctggtccacc
tttcgaatgaacctcagtgtaaccaccccgtacaatgctgactttgacggggacgagatg
aacctgcatctaccccagtccctggagacgagagctgagatccaggagcttgccatggtg
cctcggatgatcgtcaccccccagtccaacaggcccgtcatgggcatcgtgcaggatacc
ctcaccgcggtgcgcaagttcaccaagagggatgtcttcctagagcggggcgatgtgatg
aacctcctgatgttcctgtccacgtgggacggcaaggtgccccagccagccatcctgaag
ccccggccactctggacgggcaagcagatcttcagcctcatcatcccgggccacatcaac
gccatccgaacacacagcacccatccagacgaggaggacagtgggccatacaaacacatc
tcccctggggacaccaaggtgatcgtggagaatggagagctgatcatgggcatcctgtgt
aagaagtccctgggtacctctgctggctccctggtccacatctgtttcctggagatgggc
cacgacgtcacccgcctcttctactccaacatccagacggtggtcaataactggctgctc
attgagggtgcctctattggtattggtgattctattgctgacgcaaagacttaccttgac
attcagaacaccatcaagaaggccaagcaggatgtaatagaggtcattgagaaggcccac
aacaacgagttggagcccacccctggtaacacgctgaggcagacctttgagaaccaggtg
aatcgcatcctgaatgacgcccgtgacaaaacgggttcctccgcccagaagtccctgtct
gagtacaacaacttcaagtccatggtggtggctggctccaaaggctccaagattaacatc
tctcaggttattgctgtggtggggcagcagaatgtggagggtaaacgtatccccttcggc
ttcaagcaccgcacgctcccccacttcatcaaggatgactacggccctgagagcagaggc
ttcgtggagaactcgtacctggctggcctcacgcccacggagttctttttccacgccatg
ggaggcagagaggggcttattgacacggccgtgaagaccgccgaaactggttacatccag
cgtcgtctgatcaagtccatggagtctgtgatggtgaagtacgacgccaccgtgaggaac
tccatcaaccaggtggtgcagctgcgctacggagaggacggcctggccggagaggctgtg
gagttccagaacatggccacgctcaaaccctccaacaaggccttcgagaagaagttcagg
tttgactgcaccaatgagcgggcgctgcggcgcaccctgcaggaggacgttgtgaaggac
gtgatgaccaatgcccaggtgcagagtgccctggagagagagtatgagaagatgaaggag
gacagagagattctgagggccatcttccccactggggacagcaaggtggtgcttccatgc
aacctggccaggatgatctggaacgcccagaagatcttcaggatcaacccccgcaccccc
acagacctcaacccccttcgagtggtagagggtgtccaggagctgagtaagaagctggtg
attgtgaacggcgaggaccacctgagcagacaggcccagcagaacgccacgctgcttttc
aacatccacctgcgctccacgctcagctctcgacgcatgacagacgagttccgactgagc
actgaggcttacgactggctactgggggagatcgagagcaagttcaaccagtctattgcc
cacccgggtgagatggtgggggcgttagcagcccagtcgctgggagaacccgccacccag
atgaccctgaacaccttccactacgccggcgtgtcggccaagaacgtcactctgggcgtg
ccgcgtctcaaggagttgatcaacatctccaagcggcccaagaccccctccctaaccgtg
ttcctgctgggccaggcggcccgcgacgccgagagggccaaggatatcctctgtcggctg
gaacacaccaccctcagaaaggtgacggccaacacagccatctactacgaccctaacccc
cagagcacggtggtgacggaggaccaggagtgggtcaacgtctactatgagatgcccgac
tttgacgtgactcgcatctccccctggctcctccgcatcgagcttgaccgcaaacacatg
actgaccgcaagctgaccatggagcagatcgcagagaagatcaatgcaggtttcggagat
gatctgaactgtatcttcaatgacgacaacgccgagaagctggtcttgcgaattcgcatc
atgaacagcgacgagaacaagttccatgaggatgaggaagtggtggacaagatggacgac
gacgtgttcctgaggtgcatcgagtccaacatgctgacggacatgacactgcagggcatc
gagcagatcagcaaggtgtacatgcacttgccccagaccgacaacaagaagaagatcatc
attacagaggagggagagttcaaggccctgcaggagtggatcctggagacagatggcgtg
ggactgatgagggtcctcagtgagaaggacgtggaccctgtcaggaccacctccaacgat
attgtagagatcttcacggtactgggtattgaggctgtacgtaaggcgctggagagggag
ttgaaccacgtcatctcctttgacggttcctacgtcaactaccgccacttgtcgttgctt
tgcgacaccatgacgtgccgcggtcacctgatggctatcacacgtcatggcatcaacaga
caggacacgggacctctcatgaagtgctcctttgaggagacggtggatgtgctgatggag
gcgtcatcccacggggagagtgaccctatgaagggtgtgtctgagaacatcatgctgggc
cagctggccccctgcgggacgggctgctttgacctgctgctagatgctgagaagtgcaaa
tacggcatggagatccccaccaacatccccgggatcagtgtggctggacccaccggaatg
ttctttggctcggcgcctagccccatgagtggcatgtcccctgccatgaccccctggaac
actggagccacccccgcctatggtgcctggtcccccagcattggtagcgggatgactcct
ggagcagcaggcttctctcccagcgcagcgtccgacgccagtggcttctctccgggctac
tccccggcctggtcccctacccctggatctcctgggtccccggggccagccagcccctac
atcccctctccaggaggtgcgatgtctcccaactactcgcccacctccccggcctacgag
ccccgctctcctgggggatacaccccccaaagcccgggctactccccaacctctccctcg
tactccccaacctccccctcgtactcccccaccagccccaactacagccccacctccccc
tcgtactccccaacctccccctcctactccccaacctccccctcatactccccaacctcc
cctagttactcccccacgtccccctcctactccccaacctccccctcgtactctccaacc
tcccctagttactcccccacctccccctcttacagccctacatccccaagctacagccct
acgtccccaagctactcccccacctcgcctagctattcccccacctcaccctcctactcc
cctacctcaccctcctactcccctacctcaccctcctactcccccacctcaccctcctac
tcccccacctcaccctcttactcccccacctctccaagttacagcccctcttcacccaac
tacacccccacctccccctcctactcccccacctccccctcctactcccccacctcccca
aactacacccccaccagccccaactactccccgacctccccctcttattcccccacctcc
ccgtcctactctccctccagcccgcgcttcaccccccagtcgcccacctacacccccagt
tctccctcttacagccccagctcgccctcctactcacccacctcacccaaatacacccct
acgtccccctcatactcccccagctctccagagtacacccccacctcccccaaatactcc
cccacctcgcccaagtactctccgacctctcccaaatactcacccacctccccaacttac
tcaccgacgacgcccaagtacagccccacttcgcccacctactcgcccacctcgcccacc
tacacccccaccagccccaagtactcccctacctccccaacatactctccaacctcaccc
aaatactctcccacctcccccacctactcaccaactagccccaaagggtccacctacagc
cccctgtctccgggctacagcaacccctcgcccagcttcaccctcaccagcccggccatc
agcccagatgacagtgacgaggagaacaactga
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integrated database retrieval system
