Oncorhynchus mykiss (rainbow trout): 110509064
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Entry
110509064 CDS
T07259
Symbol
vcam1a
Name
(RefSeq) vascular cell adhesion protein 1
KO
K06527
vascular cell adhesion molecule 1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
110509064 (vcam1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
omy04090
]
110509064 (vcam1a)
04091 Lectins [BR:
omy04091
]
110509064 (vcam1a)
CD molecules [BR:
omy04090
]
Proteins
110509064 (vcam1a)
Lectins [BR:
omy04091
]
I-type lectins (Siglecs)
110509064 (vcam1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
V-set
C2-set_2
C2-set
HET-s_218-289
ICAM_N
ICAM1_3_5_D2
C1-set
Ig_C17orf99
Adhes-Ig_like
Ig_4
Motif
Other DBs
NCBI-GeneID:
110509064
NCBI-ProteinID:
XP_021445696
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All DBs
Position
28:complement(34284268..34300628)
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AA seq
629 aa
AA seq
DB search
MTAFALWIVLLPTAASKFVLNLTPKHPMARVGDSLVLTCKASGCAEAVTFTWSSLIDQSL
YGKTETNGTVSLQIFNPLGIHHINTVVCKATCRTKGEDTQNAQTSTKVNVYALPKDPTIS
RSDLLTEGQESNLTCTVPDVYPAERLIIEWLLGDEVLLKQDEHLEVQTVTSVLKYRPTAQ
NNGQNVTCRATLDIGIDKRTRETVASMTVQYSPRNITISENTQVKIGDGFTLTCRAEGNP
EPTVLWRKLDQDGRSVVAGEGATLLVEEASWSHGGEYECVAHNVVGNLTAHMTVNVQGPP
EKPVLYLSPSGELKAGDSVTITCQSESGPQGRVALRQLTGSQGAELESNQGHTSITVQSL
TARDSGLYECQATNPYGKQTSSINITVFNELYTETQRTTTTVASMTVQYSPRNITISENT
QVKIGDGFTLTCRAEGNPEPTVLWRKLDQDGRSVVAGEGATLLVEEASWSHGGEYECVAH
NVVGNLTAHMTVNVQAPPTNLSVEVFPSAEFEKGQNVTIWSWAVGVPAPSATLVRLRDGV
EMHSSDGTFHLVHLGPEHAGLYLLNVTNVVGHQSLSFSLSVSIQDKSVNPKTVIIPAACF
VFMTAAATTLMRFLKRAKQANSYELERTV
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgactgcgttcgcgctttggatagtattgctgcctactgcagcgtcgaaatttgtccta
aacctcacaccgaagcatcccatggctcgagtcggcgacagtctggtcctgacgtgcaaa
gccagtggttgcgccgaagccgtcacgttcacctggtcttcattgattgaccagtcactc
tacggtaaaacggagaccaacgggacagtgtccctgcaaatatttaacccgttgggaatt
catcacatcaacacggtcgtctgtaaggccacatgcagaaccaaaggagaagatacacaa
aacgcgcaaacgtctactaaggtgaacgtctacgccttaccaaaggatcccaccatatca
agaagtgaccttttgactgagggtcaggagagtaacctcacctgtacagttccagatgtg
tacccagctgaacgtctaatcattgagtggctactgggagatgaagttctcctcaaacaa
gatgaacatctggaagtccagactgtcacctcagtgttgaaatacagaccgacagcccag
aacaatggacagaatgttacctgcagagccacgctggacattgggattgacaagagaacc
agagagactgtcgcatcaatgaccgttcaatattcccccagaaatatcactatctcagag
aacactcaggtgaaaatcggagacggttttacactgacgtgtcgtgctgaggggaaccct
gaacctactgtgttgtggagaaaactggaccaagatggccgctcagtcgtggcaggagag
ggagcgaccctattggtggaagaagcgtcatggtcccacgggggagagtatgaatgcgtg
gcccacaacgtcgtaggaaaccttacagctcacatgactgttaatgttcaaggtcctcca
gagaagcctgttctttatctgagcccatctggtgagctgaaagcgggggacagtgtgacc
attacctgccaatcagagagtgggccgcaggggcgtgtggcgttacgccagttgaccggc
agtcagggggcggagctagagtccaaccagggccacacctccatcactgtccaatcgctg
acagctagagactcgggactgtacgaatgtcaggctaccaatccctatgggaaacagaca
tcttccattaacatcacagtcttcaatgagctttatacagagacccagagaaccacaacg
actgtcgcatcaatgacagttcaatattcccccagaaatatcactatctcagagaacact
caggtgaaaatcggagacggttttacactgacgtgtcgtgctgaggggaaccctgaacct
actgtgttgtggagaaaactggaccaagatggccgctcagtcgtggcaggagagggagcg
accctattggtggaagaagcgtcatggtcccacgggggagagtatgaatgcgtggcccac
aacgtcgtaggaaaccttacagctcacatgactgttaatgttcaagcgccgcccacaaac
ctgtccgtggaggtgttcccgtctgctgagtttgagaaggggcagaacgtgaccatctgg
agctgggctgtgggcgttcccgccccctccgccaccctggtgaggctgcgggatggggtg
gagatgcactcctctgacggaaccttccacctggtccacctgggcccggagcacgctggg
ctctacctgctcaatgtcaccaatgtagtgggacaccagagcctcagcttcagcctcagc
gtcagcatccaggataaatccgtcaatccaaagaccgtcatcatacctgcagcgtgcttt
gttttcatgaccgctgctgccacgactctgatgcgattcctgaagagagcaaaacaggca
aattcatatgaacttgaaaggacagtttag
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