Oncorhynchus mykiss (rainbow trout): 110516660
Help
Entry
110516660 CDS
T07259
Name
(RefSeq) probable methyltransferase TARBP1 isoform X1
KO
K15333
tRNA guanosine-2'-O-methyltransferase [EC:
2.1.1.34
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
omy03016
]
110516660
03036 Chromosome and associated proteins [BR:
omy03036
]
110516660
Enzymes [BR:
omy01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.34 tRNA (guanosine18-2'-O)-methyltransferase
110516660
Transfer RNA biogenesis [BR:
omy03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
110516660
Chromosome and associated proteins [BR:
omy03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
110516660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SpoU_methylase
Motif
Other DBs
NCBI-GeneID:
110516660
NCBI-ProteinID:
XP_036843475
LinkDB
All DBs
Position
1:complement(85171944..85207269)
Genome browser
AA seq
1676 aa
AA seq
DB search
MSSILINALLSSCHDPDTLFNTLCWPTDSWPDAERVEALTTFIDGIGKLPQSDTSDDGDK
VAFSIAKRDIFLRKVESIIWTQCLPLLLKVSNGDGACKGKRVPDGRAEITIAVCRLLSVC
INTLCDTAVSGQVARAVLPSFQLPDGETEEELPGQGEGRLGIDVAIEAMSVILPAVSSNE
ELTTSILSSALSCIKTLPDALVSKITVRLIFTLLNCYSEDGIASKLRFILEDLCSWHKSD
SSNTDSPVVTERALLCLTTLSDYLFSPAKVQQHTLPQSLSYTRPDPRCSLQFWRILQDGL
THKDNVSRKRALYLLKRCVALSEDEAVEFPSSSVSSEDNEEIIFRWAPDRCKLLREFWED
YALVMETLEENQIHVVRPVLNRIHTLIQTAANDSQGVSLFHPSWLLGVYQRMFHSENKSV
MREGVDHLLELQVLRRPAFALAFSQFILGPFMDVMSESSLFHRTAGQSVGECPELGVKLQ
VFMVTFFSSLPQENRGPVLLQLVQRLGSQHWCAVPILFLSRALSHLPPCPLLGPEGLQAL
REVLRCTMITHQVLLRGAAQCFLLNSALSLTDVTLVTLDDVFSLLVHFRADESLRRGTPL
WNQLCDWLADSEGSFRPCVRESADGTSTSTSPERETVRGYVQHQMELFLRVPASTDQTDS
VPDPGEAELLAKAILLCVDIEGRTPRSGGEQTTGVSGGMDSLLRPLLDTLSRLHTNVYLP
LRKTDKSLQLLLRLLQLTPARHTPAALLQLTPARHTPAAVLQLTPARHTPAAVEKEQEDS
VTVSMETLVLGVVEPIQEFILRRLSGELQELCDVERAELYLSVLKEVVLMYSVLEWNHSK
VQEAYFPRLLRYVLRTLEADQIPSVAGQVSRAVAMASLAMTCEVAALGVFNLQSETTILL
VHLSSYFYSPAPPPAPPLSLVNFNQTLLKPPTAAQSTGVSEQGPLLKDWGRMAAHFIRDQ
WTCLGYGRRIGPPGPLELPRASGSLQAAIEALSLLPSGLVLPVLDFMASMLPQVALSEEA
LCVEAVTVSWKLVLGLSSNPHDFWPTLQGFVTMAFHHSLLELTEEQAPGLTVTLQQIAIE
LMELSQAKTGVFNVLIQHCCHTWLPTGPGSEGESQSDAMFSSALLHLDILAEACVYGPVF
RRDQRLIQEVQVYVERLGEECAANTAVPSDNRDDQFPRVCVVAFLSRLQPSNQLHERLME
ELVLCLLKKDEAISKSKQRYYSNSLQHRVKNRVWQTLLMLLPKLRGEFVGTVLGRVFEAG
FVSNQASVKYLIEWKMVLILVQYPEHIDRLWACFSVDQEKTKTSVCTFLSVLVHLNIIMP
QLKEKAVQWRKALDVILQWCFSHNFSVRLYALLALKRVWGLEGDGLGGLATVVKACLHQA
EAMQSTGNANKNWTRIQDHFFFGGFHPVRDYSVESIFYTFPSLSEVFEDEWIPPWKFEKL
VDFSQSASLPLRNPVPDLSQIQPGDWIQQDKGDQDGEERWAEVQKKMTPWRLGIQEQEPE
LGLVPQQRAARLGKLHSALLVVASLIDKPTNLGGLCRTCEIFGASALVLDSLRHVSDKHF
QALSVSSELWLPLLEVKPVELADFLQLKKREGYCIVGVEQTANSQSLKDYKFPEKTLLLL
GNEREGIPANLLQLLDVCVEIPQQGVIRSLNVHVSAALLVWEYTRQYLPTTGVKSD
NT seq
5031 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctattttaatcaatgcccttttatcaagttgccatgatccggatactttgttt
aacacgttgtgctggccaactgactcgtggccggacgcagaaagagtagaggcactgaca
acgtttattgatggaattggtaaactaccccagtctgacacatctgacgatggcgacaaa
gttgccttttcaattgcaaaaagagacatctttctacgaaaagttgaatcgatcatttgg
acacaatgtttaccacttctcttgaaagtctctaacggagacggggcgtgcaaaggtaaa
cgtgtgccagatggaagggctgaaatcaccatcgctgtgtgcaggcttctttctgtctgc
atcaacacactgtgtgacacggccgtttcggggcaagtcgcccgcgctgtcctgccatcc
ttccagctgccagacggggagacagaggaagagcttcccggccagggtgaggggcggctg
ggtatcgacgtggctatcgaagccatgtcagtcatcctacccgctgtctcatccaacgaa
gaattgaccacgtcgatcctctcatctgccctgtcctgtatcaagacgttaccggatgct
ctggtctccaaaatcaccgttcggcttattttcactctcctcaactgctacagcgaggat
gggatagcgagtaaactccggttcattttagaggatttgtgtagctggcacaagagtgac
agctcaaacacggactcacctgtggtgacagaacgcgccttgctgtgtttaacaactctc
tcggactatctcttctctccggctaaagtacagcaacacacccttcctcaaagtctgagc
tatactcgacctgaccctcgttgttctctgcagttctggaggattctacaagatggactg
acgcacaaagacaacgtgtcccggaagcgggcgttgtacctgctgaaaaggtgtgtcgct
ctgtcagaggatgaggcggttgagtttccaagcagttcagtgtcaagtgaagataatgag
gagatcatattcagatgggccccagacagatgcaagctgctcagagagttctgggaggac
tatgccttggttatggagacactggaggagaaccagattcacgtggtccgccctgtgctc
aacagaatccatacgttgatccaaacagcagccaatgatagtcaaggcgtcagtctgttc
cacccgtcatggctgctgggtgtgtaccagcgtatgttccacagtgagaacaagtccgtc
atgagagagggagtggatcacctactggaactccaggtgctccgacgccctgccttcgcc
ctggccttctcacagttcattctgggtcctttcatggatgtgatgtctgaaagctccctc
tttcacaggactgcaggacagagtgtaggagagtgtcctgagctgggagtcaagctgcag
gtcttcatggtcacgttcttcagcagcctgccacaggagaacagaggtcctgtgttgctg
cagcttgtccagcggctaggttctcaacactggtgtgctgtccccatcctcttcctctct
cgggccctgtcccaccttcctccctgccctctcctgggccccgaaggcctgcaagctctc
agggaggtgctccgctgcactatgatcacccaccaggtgctactgagaggagctgcccag
tgtttcctgctgaacagtgccctctccctgacagatgtgaccttagtgacattggatgat
gtgtttagtttgctggtgcatttcagagcagacgagtctctacgtagaggaacaccgctc
tggaatcagctgtgtgactggctggctgacagtgaaggcagcttcaggccctgtgtcaga
gaatcagctgatggtaccagtaccagtacctctccagagagagagactgtgagaggctac
gtccaacaccaaatggagctcttcctcagagtcccggctagcacagaccagacagacagt
gtcccagacccaggagaggcggagctgctagccaaggccatcctactgtgtgttgacata
gaggggaggactccgaggtctggaggagagcagactactggtgtcagcggtgggatggac
tcgctcttacgccccctactggacacactgagcaggctccacactaatgtctacctgccg
ctacgcaagactgacaagagcctgcagctgctgctacgactactgcagctcacaccagcc
agacacacccctgctgcattactgcagctcacaccagccagacacacccctgctgcagta
ctgcagctcacaccagccagacacacccctgctgcagtagagaaagaacaagaagacagt
gtgacggtctccatggaaacgctggttctgggcgtggtggagcccattcaggagtttatc
ctccgaagactgagtggagaactacaggagctatgtgatgtagagcgtgctgagctctac
ctgtcagtgctgaaggaggtggtgctgatgtacagtgtgttagagtggaaccactccaag
gtacaggaggcctatttccccagactcctcagatacgtcctgaggaccctagaagctgac
cagatcccctctgtggcgggtcaggtgtccagggcggttgccatggcgtcgttggccatg
acctgtgaggttgcagcgttgggagtgttcaacctccaatcagagaccacgattctactg
gtccatctgtctagctacttctactcccctgctccacccccagcccctcctctctctctg
gtcaacttcaaccagaccctgctgaaacctccaactgcagctcagtcaacaggtgtttca
gagcagggtcctctcctcaaggactggggccgtatggcagctcatttcatccgggaccag
tggacgtgtctgggatacgggaggagaataggcccacccgggcccctggagctccccagg
gcgtcagggtccctccaggctgctatagaggctctgtctctgctgcccagtggcctggta
ctgcctgtactggacttcatggcctccatgttgccacaggtggcgctgtctgaggaggcc
ctgtgtgtagaggctgtgactgtctcctggaagctggtgctgggactgagcagtaaccct
catgacttctggcccaccctgcagggctttgtgaccatggcctttcaccacagcctgctg
gagttaacagaggagcaggcacctgggctcactgttactctacaacagatagccattgag
ttgatggaactctcccaggccaagactggtgtattcaacgttctgatccaacactgctgc
cacacctggctgcccactggcccaggaagtgaaggcgagagccaatcagatgccatgttc
tccagtgccctactgcaccttgacatcctggctgaggcatgtgtgtatggacctgtgttc
aggagggaccaaaggctgatccaggaggttcaggtctatgtggagaggcttggagaggag
tgtgctgctaacactgcagtccccagtgataaccgggatgaccagttcccacgtgtgtgt
gtcgtggcgttcctcagccgcctccagccctccaatcagctgcatgagagactgatggaa
gaactggttctctgcttgcttaaaaaggatgaggccatatcgaagtcaaaacagcgttac
tatagcaactccctgcagcatcgtgtcaagaacagggtgtggcagacactactgatgctg
ctgcccaaactgagaggggagtttgtaggtaccgttctgggtcgtgtgtttgaggcaggt
ttcgtcagtaaccaggcctcagtcaagtacctgatagagtggaagatggttctaatccta
gtccagtatcctgaacacatagaccgactctgggcctgcttcagtgtggatcaagagaag
accaagaccagtgtctgtaccttcctgtctgtgttggtccacctcaacatcatcatgcct
caactcaaggagaaggcagtacagtggcgtaaggccctggatgttatactccagtggtgt
ttcagccataacttcagtgttcgtctgtacgccctgctggccctgaagagggtgtggggt
ctggagggggatgggctcggggggttggccaccgtcgttaaggcctgtctgcaccaggct
gaggctatgcagagtactggaaatgccaataagaactggaccaggatccaggaccacttc
ttctttggtggctttcatcctgttagagactatagtgtggaatccatattctacacattc
cccagcctatcagaggtgtttgaggacgagtggattccgccctggaagtttgagaagttg
gtggacttctcccagagtgcatctctcccgttgaggaaccctgtccctgacctgagccag
attcagcctggagactggatccagcaggataaaggggatcaggatggtgaggagcgctgg
gccgaggtccagaagaagatgaccccctggaggttggggatccaggaacaggagccagag
ctgggtctggtgccccagcagagagcagcacgcctgggcaagctgcacagtgccctcctg
gtggttgcctctctcatagacaagcccaccaacctgggaggtctgtgtaggacgtgtgag
atctttggggccagtgctctggtattggacagtcttcgccacgtcagtgataaacacttc
caggccctgagtgtctcctctgagctatggctccccctactggaggtgaagcccgtagaa
ctagctgacttcttgcagctgaagaagagagagggctactgcattgtgggagtggagcag
acagccaatagtcagagtctaaaggactacaagttccctgagaagactctgttactgctg
ggtaatgagcgtgagggtatcccagctaacctgctccagctgctggatgtgtgtgtggag
atccctcagcaaggtgtcatccgttccctcaacgtacacgtgagcgccgccctgctggtg
tgggagtacacccgccagtacctgcccactactggagtgaagtcagactga
DBGET
integrated database retrieval system
