Oncorhynchus mykiss (rainbow trout): 110525549
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Entry
110525549 CDS
T07259
Name
(RefSeq) LOW QUALITY PROTEIN: hepatocyte nuclear factor 1-alpha
KO
K08036
transcription factor 1, hepatocyte nuclear factor 1-alpha
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omy03000
]
110525549
Transcription factors [BR:
omy03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
110525549
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HNF-1B_C
HNF-1_N
HNF-1A_C
Homeodomain
Telethonin
HTH_37
Motif
Other DBs
NCBI-GeneID:
110525549
NCBI-ProteinID:
XP_021461432
Ensembl:
ENSOMYG00000027714
LinkDB
All DBs
Position
6:23677474..23703291
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AA seq
541 aa
AA seq
DB search
MEGEERKWGPGRLTNLQNELIWALLGSGLSREVLVQALEELEQERVTPGAEKGDRGDGES
SEEGEMDFPPPIFQELEALPSEEAARQRALVDQLLQKDPWHVAKLVKSYMQQHNLPQREV
VESTGLNQSHLSQHLNKGTPMKNQKRAALYSWYVRKQGKISQQFTNASHGLGTGEEQGED
IRKGRRNRFKWGPASQQILFHAYERQKNPSKEEREGLVEECNRVECLQRGVSPSQLAGLG
SNLVTEVRVYNWFANRRKEEAFRHKLALDTPYTSQSASTTNHTLSHSPVQGMKYSQQIPC
DSLGSARGRSGDRGLGGHLASPIQLEPSHTLLETHYHKLVSGGGPLPPVSTLTSLHSLSA
SPSPPQGLVMASLPSAMSLGESSLLIGQTVPVINNMGGGFTTLQPISFQQQLTQQFQNHM
GHSSFMATMTGLPCHMYSKSDMSPYPPSSLLSQAMVVTDSSSLGTLTSLSAVRQILTTDP
EEETEPIQDDSLHLQSPSPVPVSSGNLEFYPXPETHPPHLRSSSPADINSYIPEHMVSTA
Q
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atggagggagaggagaggaaatggggccctgggcgtctgactaatctccaaaatgagctt
atctgggcactgctgggctctggactgtcccgggaggtcctggtccaagcactggaagaa
ctggagcaagagagggtcacccctggagcagagaagggggacaggggagatggagagagt
tcggaggagggagaaatggattttccaccaccaatattccaggagctggaggcactaccc
tcagaggaggcagccagacagagggctctggtcgaccaacttctgcagaaggatccatgg
catgtggcaaaactggtgaagagctacatgcagcagcataacctcccccagagagaggtg
gttgagtccacaggcctcaaccagtcccatctctcccaacacctcaacaaaggcacaccc
atgaagaaccagaaacgggctgctctatacagctggtatgtcaggaagcagggcaagatt
agccagcagtttaccaatgccagtcatggccttgggaccggagaggagcagggagaggac
ataaggaaaggacggaggaacaggttcaaatggggacccgcctcccagcaaatcctattc
cacgcctatgaacgacagaagaacccaagtaaagaggagcgagagggattggtggaggag
tgtaacagggttgagtgtctccagaggggtgtgtctccgtcccagctggctggactgggc
tctaacctagtgacagaggtacgagtgtacaactggtttgctaaccgccgcaaggaggag
gcattccgccataaactggctctcgatacgccttacaccagccaatcagcaagcaccacc
aaccacactctctcacacagccctgtgcaaggcatgaagtacagccagcaaatcccatgt
gacagtctgggatcagcaaggggtcgcagtggagaccgaggcttgggaggccacctggcc
agccccatccaacttgagcccagccacacactcctggaaacacactatcacaaactagta
tcaggaggtggtccactgcccccagtaagcaccctgacctcactccacagtctgtctgcc
tcgccttctcccccccagggactcgtcatggcctccttgcccagcgccatgagtctggga
gagtcctctctcctcattggtcaaacagtacctgtcatcaacaacatgggaggcgggttc
accacccttcagccaatctctttccagcagcaactcacacagcagtttcagaatcatatg
ggccacagttctttcatggcaaccatgacagggcttccatgtcacatgtacagcaagtcc
gatatgtctccctaccctccgtccagcctactgtcccaagccatggttgtcactgacagc
agcagccttggaacactgaccagtctaagcgcagtcagacagattctgacaacagaccct
gaggaggagacagaacccatccaggatgactctctacacctgcaatccccttcacctgtg
ccagtttcctctgggaacttagagttttatcctnnccctgaaactcatccacctcacctc
cgctcatcttcgccggcagacatcaactcctacattcctgaacatatggtctctactgca
cagtag
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