Oncorhynchus mykiss (rainbow trout): 110526594
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Entry
110526594 CDS
T07259
Symbol
polr1b
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA2
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
110526594 (polr1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
omy03021
]
110526594 (polr1b)
Enzymes [BR:
omy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
110526594 (polr1b)
Transcription machinery [BR:
omy03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
110526594 (polr1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpa2_4
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
DUF1186
Motif
Other DBs
NCBI-GeneID:
110526594
NCBI-ProteinID:
XP_021463370
Ensembl:
ENSOMYG00000015804
LinkDB
All DBs
Position
1:62631554..62651962
Genome browser
AA seq
1134 aa
AA seq
DB search
MDFASKWSSLLTSPSLKHLTEAGYGIPKEKQHAAVQDLTKAHIESFDQAVSEGLCRAVQA
IRPLEFMFKNDRISLAFVEATIFKPVVGKGSICRDLRVFPAECRGRRCSYRGKLVADVSW
SVNGVPKGIIKQSLGQLPIMVKSRLCNLHGLPPKELIEHHEEAEEMGGYFIVNGNEKVIR
MLIMPRRNYPIAMSRPKWKNRGQGYTQYGVSMHCVKEEHTAINMNLHYLDNGTVMLNFIY
QKELFFLPLGFALKALVDFTDFQIYQELIKGREANSFYKSCVSEMLRLVMEEGCITRGKV
LNYLGERFRVKMNLPEWYTHEQCANYLLDQCICIHLRSDVEKFYLLCLMTRKLFTFAKQE
CMEENPDSLMCQEVLTPGRLYLMFLKEKMAAWMVSVKLSMDKRAHRLTGGMSSDNLVKMF
NMGSDVTHPFEYLLATGNLTSKTGLGMLQNTGLCVVADKLNFIRYLSHFRCVHRGAAFAK
MRTTSVRRLLPESWGFLCPVHTPDGEPCGLMNHMTAHCEIIAPALPTTTLPALLCSLGVT
PVDGSPGRAYTDCYPVLLDGAMVGWVETDLAPFLADSLRRFKVLKEKKIPPWTEIVLVPQ
TSKASMYPGLYLFTTPCRMVRPVHNLALGQQELIGTFEQLYINVGISEDEIEPGVTTHQE
LFLHSMLSVVANFIPYSDHNQSPRNMYQCQMGKQTMGFPLHSFQDRSDNKLYRLQTPQSP
LVRPVMYDHYNMDNYPIGTNAIVAVISYTGYDMEDAMILNKSSWERGFAHGCVYKTELVD
LAEKMKGEDNLVFGVKPGDPKVMDKLDADGLPSIGTVLQHGDPFYSYINLNTGQTFVNFY
KSQESCVVDNIKVCSNDVGSGRFKRVCITVRVPRNPTIGDKFASRHGQKGILSRLWPAED
MPFTESGMTPDILFNPHGFPSRMTIGMLIESMAGKSGALHGLCHDATPFTFSEENSALEH
FGDMLRAAGYNHYGTERLYSGLSGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKV
TNQPVGGRNIQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAQVCVDCGSLLSPLL
EKPPPHWSATRHRKTVCLLCGKSDSIDTVSVPYVFRYFVAELAAMNIKIKLDVK
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atggattttgcgagtaagtggagtagtttactgacaagtccaagccttaaacatttaaca
gaagcaggctacggcataccgaaggaaaaacaacatgccgctgttcaggacctaacgaag
gctcatattgagtcgtttgaccaagcagtttcagaaggactgtgtcgtgctgtacaggcc
atccgtcccttggagtttatgtttaaaaatgaccggatcagcctggcatttgtggaggcc
accatctttaaaccagtggtgggcaaaggaagcatctgccgggacctgagggtgttccca
gcagagtgcagagggagacgctgctcctaccgggggaagcttgtggcagatgtcagctgg
tccgtgaatggggttcccaaaggcatcatcaagcagtctctgggccagttgcccatcatg
gtgaagtctaggctgtgtaacctacatgggctccctcccaaagagctcattgagcaccat
gaggaggctgaggaaatgggtggttattttattgtgaatgggaacgagaaggttattcgc
atgctgatcatgccaaggaggaactaccctatcgctatgtcaaggccgaagtggaagaac
agaggccagggatacactcagtatggtgtctcaatgcactgtgtgaaggaggagcacacc
gctatcaatatgaacctgcattacctggacaatgggactgtgatgctcaacttcatatac
cagaaagagctattcttcctccccctgggctttgcactaaaggctctagtggacttcaca
gacttccagatttaccaggagctgatcaaaggtcgtgaggcgaactccttctacaagagc
tgtgtgtctgagatgctgcgactcgtcatggaggagggctgcatcacccgcggcaaggtg
ctcaactacctgggcgagcgcttccgggtcaagatgaacctgccagagtggtacacccat
gaacagtgtgccaactacctgctagaccagtgcatctgtatccacctgaggtcggacgtg
gagaagttctacctgctgtgtctgatgacgcggaagctattcacgtttgccaagcaggag
tgcatggaggagaacccggacagtctgatgtgtcaggaggtgctcacgccaggacggctc
tacctaatgtttctcaaggagaagatggctgcctggatggtgtctgtgaaactgtctatg
gacaagagggcccataggctgactggtgggatgagctctgataatctggtgaagatgttc
aacatgggctctgatgttactcatccctttgagtatctgctagccactgggaatctcact
tcaaagacgggtctgggcatgctccagaacacgggactgtgtgtggtggccgacaagctc
aatttcatccgctacctgtcccacttccgctgtgtgcacagaggtgcagcctttgccaag
atgaggaccacctccgtacgtcgtctgctgcccgagtcctggggcttcctgtgccctgtg
cacacccccgacggagagccctgcggcctcatgaaccacatgacggcccactgtgaaatc
atagccccggccctgcccaccaccaccctccctgccctgctctgctccctcggtgtgact
cctgtggatggttctcctggcagggcctacactgactgctatcctgtgctcctggatggt
gccatggtgggttgggtagagactgatctggcccccttcctcgcagactccctccgcagg
ttcaaggtgttgaaggagaagaagatccctccctggactgagatagttctggttccccag
accagcaaggccagcatgtacccaggcctgtacctcttcaccaccccctgccgcatggtg
cggcctgttcacaacctggccctgggccagcaggaactgatcggcacctttgaacagctc
tacatcaacgtgggcatcagtgaggatgagattgagccgggtgtgaccacccaccaggag
ctcttcctccacagcatgctgagcgtggtggctaactttatcccttactcggaccacaac
cagagtcccaggaacatgtaccagtgccagatgggtaaacagaccatgggcttccccctc
cactcgttccaggaccgctcggacaacaagctgtaccgccttcagacccctcagagccct
ctggtcaggcctgtcatgtacgaccactacaacatggacaactaccccatcggcaccaac
gccattgtcgctgtgatctcctacactggctacgatatggaggacgccatgatcctgaac
aagtcctcgtgggagaggggctttgctcatggctgtgtttacaagactgagctggtggac
ctggcagagaagatgaagggcgaggacaacctggtgtttggggtcaaacccggtgacccc
aaggtaatggacaaactggacgctgatgggctgccctccatcggcacagtgctacaacat
ggagaccccttctacagctacatcaacctcaacaccggacagacctttgtcaacttttac
aagagtcaagaaagctgtgtagtagacaacatcaaggtgtgcagcaatgacgtgggctcg
ggccgcttcaagcgcgtctgcatcaccgtgcgagtgccccgtaaccccaccatcggggac
aagttcgccagccgccacgggcagaagggtatcctgagccgcctgtggcctgccgaggac
atgcccttcacagagagcggcatgacccccgacattctgttcaaccctcacggcttcccc
tcccgcatgaccatcggcatgctcatcgagagcatggccggcaagtcgggcgccctccac
ggcctgtgccacgacgccactcccttcactttctccgaggagaactcggcactggagcat
tttggggatatgttgcgcgctgctggctacaaccactatggcaccgagcgcctctacagc
ggcctcagcggcctggagctagaggcggacatcttcatcggcgtggtctactaccagagg
ctgcgtcacatggtctccgacaagttccaggtgaggaccactggcgcgcgggacaaggtg
accaaccagccggtgggcggaaggaacatccaggggggcatccgcttcggggagatggag
cgcgacgccctgctggcccacgggacatccttcctgctccacgaccgcctcttcaactgc
tctgatcgctctgtggcacaggtgtgtgtggactgtggtagcctactgtcccctctactg
gagaaaccaccaccccactggtcggccacacgccaccgcaagactgtctgcctcctctgc
ggcaagagtgactccatcgatacggtgtctgtgccatacgtcttccgctactttgttgcc
gagctggcggcgatgaacatcaaaatcaaattggacgtgaagtaa
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