Oncorhynchus mykiss (rainbow trout): 110531828
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Entry
110531828 CDS
T07259
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03020
RNA polymerase
omy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
110531828 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
110531828 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
omy03021
]
110531828 (polr2a)
03400 DNA repair and recombination proteins [BR:
omy03400
]
110531828 (polr2a)
Enzymes [BR:
omy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
110531828 (polr2a)
Transcription machinery [BR:
omy03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
110531828 (polr2a)
DNA repair and recombination proteins [BR:
omy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
110531828 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
110531828
NCBI-ProteinID:
XP_036843579
Ensembl:
ENSOMYG00000008585
LinkDB
All DBs
Position
9:complement(25586530..25603298)
Genome browser
AA seq
1967 aa
AA seq
DB search
MHGPPSGDSACPLRLIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFVNKIMKVLRCVCYSCSKLLVDTN
NPKIKDILQKSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGVEHDSEDITKEKGHGGC
GRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVYEIFKRISDEEDVILGLDPKFSR
PEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHVIA
EDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSAR
TVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNG
DRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIIFNRQPTLHKMSMMGHRVRILPWSTFRM
NLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTA
VRKFTKRDVFLERGDVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINAIR
THSTHPDEEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHICFLEMGHDV
TRLFYSNIQTVVNNWLLIEGASIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHNNE
LEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQV
IAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGR
EGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAVEFQ
NMATLKPSNKAFEKKFRFDCTNERALRRTLQEDVVKDVMTNAQVQSALEREYEKMKEDRE
ILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPLRVVQGVQELSKKLVIVN
GEDHLSRQAQQNATLLFNIHLRSTLSSRRMTDEFRLSTEAYDWLLGEIESKFNQSIAHPG
EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLL
GQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVTEDQEWVNVYYEMPDFDV
TRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNS
DENKFHEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITE
EGEFKALQEWILETDGVGLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELNH
VISFDGSYVNYRHLSLLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEASS
HGESDPMKGVSENIMLGQLAPCGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMFFG
SAPSPMSGMSPAMTPWNTGATPAYGAWSPSIGSGMTPGAAGFSPSAASDASGFSPGYSPA
WSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSYSP
TSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPSSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSY
SPSSPRFTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTS
PKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPKYS
PTSPTYSPTSPKGSTYSPLSPGYSNPSPSFTLTSPAISPDDSDEENN
NT seq
5904 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggcgacagcgcatgcccattgcgcctcatcaagagagtgcaa
ttcggcatcatcagcccagatgagcttaaacggatgtctgtcacagaagggggaatcaag
taccccgagaccacagaaggagggcgtcccaaactcggtgggttgatggaccccagacaa
ggggtcatcgaacgatccggaaggtgtcaaacatgtgcaggtaacatgacagaatgcccg
ggccacttcggccacatagagctggcgaagccggtgttccacgtgggcttcgtcaacaag
atcatgaaggtcctccggtgtgtctgctactcctgttccaagctactggtcgacacgaat
aatccaaagatcaaagacatcctgcagaagtccaagggacagcccaggaagcgtctgacc
cacgtgtatgacttgtgtaaaggcaagaacatctgcgagggcggagaggagatggataac
aagtttggagtggagcacgacagtgaggacatcactaaggaaaagggccatggtggctgc
gggcgctaccagccgcgtatccgccggtcgggcctggagctgtatgccgagtggaagcac
gtgaacgaggactcgcaggagaagaagatcctgctgagccccgagcgtgtctacgagatc
ttcaaacgcatctcggacgaggaggacgtcatcctgggccttgatcccaagttctcccgg
cccgagtggatgattgtcacggtactccctgtgccgccgctagctgtccggcccgccgtc
gtcatgcagggttccgcccgtaaccaggacgacttgacacacaagctggccgacatagtc
aagatcaacaaccagctgcggcggaacgagcagagcggcgcggcggcccacgtcatcgcc
gaggacgtgaagctgctgcagttccacgtggccaccatggtggacaacgagctgccaggc
ctgcccagggcaatgcaaaaatcgggccgcccgctcaaatccttaaaacagcgtctgaag
gggaaggaggggcgagtccgaggtaacctgatggggaaacgtgtggacttctccgcccga
accgtcatcacccccgaccccaacctgcagatcgaccaagtgggcgtcccgcgctccatc
gccgccaacatgactttcccagaaatcgtcacaccctttaacattgacaggttacaggag
ttggtgcgcagaggcaacagccagtatcctggagccaaatatatcatccgagacaacggg
gacagaatcgacctgcggttccaccccaaaccaagtgaccttcacctccagatcggctac
aaggtggaaagacatatgtgcgacggtgacatcatcatcttcaacagacagcccacttta
cataaaatgtctatgatggggcacagagtccgaatccttccctggtccaccttccgaatg
aacctcagtgtaaccactccgtacaatgctgactttgacggggatgagatgaacctgcat
ctccctcaatccctggaaacgagagctgagatccaggagcttgccatggtgcctcgtatg
atcgtcaccccccagtccaacaggcctgtcatgggcatcgtgcaggacaccctcaccgcc
gtgcgcaagttcaccaaaagggacgtcttcctagagaggggcgatgtgatgaatctcctg
atgttcctgtccacgtgggacggcaaggtgccccagccagccatcctgaagcccaggccg
ctctggacgggcaagcagatcttcagccttatcatcccgggccacatcaacgccatccga
acacacagcacccacccagacgaggaggacagtgggccctacaagcacatctctcccggg
gacaccaaggtgatagtggagaacggggagctgatcatgggcattctgtgtaagaagtca
ctgggtacctctgctggctccctggtccacatctgtttcctggagatgggccacgacgtc
acccgcctcttctactccaacatccagacggtggtcaacaactggctgctcattgagggt
gcctctatcggtattggtgactccattgctgatgcgaagacgtacctggacatccagaac
accatcaagaaggccaaacaggatgtaatagaggtcattgagaaggcccacaacaacgag
ttggagcccacccctggcaacacgctgaggcagacctttgagaaccaggtgaatcgcatc
ctaaacgacgcccgtgacaaaacgggttcctccgcccagaagtccctgtctgagtacaac
aacttcaagtctatggtggtggctggctccaaaggctccaagattaacatctctcaggtt
attgcggtggtggggcagcagaacgtggagggtaagcgtatccccttcggcttcaagcac
cgaactctcccccacttcatcaaggatgattacggccccgagagcagaggcttcgtggag
aactcatacctagccggcctcacgcccacagagttcttcttccacgccatgggtggcagg
gaggggcttatcgacacggctgtgaagaccgccgagactggttacatccagcgtcgtctg
atcaagtccatggagtctgtgatggtgaagtacgacgccacggtgaggaactccatcaac
caggtggtgcagctgcgctacggagaggacggcctggccggggaggctgtggagttccag
aacatggctacgctcaaaccctccaacaaggccttcgagaagaagttcagatttgactgc
accaacgagcgggctctgaggcgcaccctgcaggaggacgtggtgaaggacgtgatgacc
aacgctcaggtgcaaagtgccctggagagggagtatgagaagatgaaggaggacagagag
attctgagggccatcttccccactggggacagcaaggtggtgctgccctgcaatctggcc
aggatgatctggaacgcccagaagatcttcaggatcaacccccgcacccccacagacctc
aaccccctacgagtcgtgcagggtgtccaggagctgagtaagaagttggtgattgtgaac
ggcgaggaccacctgagcagacaggcccagcagaacgccacgctgctcttcaacatccac
ctgcgctccacgttgagctcccgacgcatgacagacgagttcagactgagcaccgaggcc
tacgactggctgctgggggaaattgagtccaaattcaaccaatccattgcccatccgggt
gagatggtgggggcgttagctgcccagtcgttgggagagcccgccacccagatgaccctg
aacaccttccactacgccggcgtgtcggccaagaacgtcaccctgggcgtgccgcgtctc
aaggagttgattaacatctccaagcggcccaagaccccctccctcaccgtgttcctgctg
ggccaggcagcccgcgacgccgagagggccaaggatatcctctgtcgcctggaacacacc
accctcagaaaggtgacggccaacacggccatctactacgaccctaacccccagagtacg
gtggtgacggaggaccaggagtgggtcaatgtctactatgagatgcccgacttcgacgtg
acccgcatctccccctggctgctccgcattgagctcgaccgcaaacacatgactgaccgc
aagctgaccatggagcagatcgctgagaagatcaatgcaggtttcggagacgacctgaac
tgtatcttcaatgacgacaacgccgagaagctggttctgcgaatccgtatcatgaacagc
gacgagaacaaattccacgaggacgaggaggtggtggacaagatggacgacgacgtgttc
ctgaggtgcatcgaatccaacatgctgacggacatgacgctgcagggcattgagcagatc
agcaaggtgtacatgcacttgccccagacggacaacaagaagaagatcatcattacagag
gagggagagttcaaggccctgcaggagtggatcctggagacagacggcgtgggactgatg
agggtcctcagcgagaaggacgtggaccccgtcagaaccacttccaacgacatcgtagag
atcttcacggtactgggtatcgaggctgtgcgcaaggctctggagagggagttgaaccac
gtcatctcctttgacggttcctacgtcaactaccgccacttgtcgttgctttgcgacacc
atgacctgccgcggtcacctgatggccatcacgcgtcacggcatcaacagacaggacacg
ggacccctcatgaagtgctcctttgaggagactgtggatgtgctgatggaggcgtcgtcc
cacggggagagtgaccccatgaagggtgtgtctgagaacatcatgctgggccagctggcc
ccctgcgggacaggctgcttcgacctgctgctggacgctgagaagtgcaaatacggcatg
gagatccccaccaacatccccgggatcagcgtggctggacccaccggaatgttctttggc
tctgcgcccagccccatgagtggcatgtctccagccatgaccccctggaacactggagcc
acccccgcctacggtgcctggtcccccagcatcggcagcgggatgacccctggagctgca
ggcttttctcccagcgcagcgtccgacgccagtggcttctctccgggctactccccggcc
tggtcccctacccctggatctcctgggtccccggggccagccagcccctatatcccctct
ccaggaggtgccatgtctcccaactactctcccacctccccggcctacgagccccgctct
cctgggggatacaccccgcaaagcccgggctactccccaacctccccctcgtactcccca
acctccccttcttactctcccaccagccccaactacagccccacctcaccctcctattca
cccacctcccccagctactccccgacctccccctcatactcccctacgtccccctcttac
tcccccacctccccctcttactcccccacctccccctcctactcccccacatctccctcc
tactcccctacctcccccagctacagccccacgtctccaagctacagccccacatcgcct
agctactcccccacctcaccctcttactcacctacctccccctcttattcacccacttca
ccctcctactcccctacctccccctcctattcccctacctccccctcttactcccccacc
tctccaagctacagcccctcttcacccaactacacccccacctcgcccagttactccccc
acctccccctcttactcccccacctctccctcctactcccccacctcccccaattacacc
cccaccagccccaactactcccccacttccccctcttattctcccacctctccgtcctac
tctccctctagcccgcggttcaccccccagtcgcccacctacacccccagctctccctcc
tacagccccagctctccttcctactcacccacctcccccaaatacacacctacgtccccc
tcttactcgcccagctctccagagtacacccccacctcccccaaatactcccccacctcg
cccaagtactctccgacctctcccaaatactcacccacctccccgacttactccccgacg
acccccaagtacagccccacgtcgcccacctactcccccacctcgcccacctacaccccc
accagccccaagtactcccccacctccccaacctattccccaacctcacccaaatactct
cccacctcccccacctactcgcccactagccccaaagggtccacctacagccccctgtct
ccgggctacagcaacccctcgcccagcttcaccctcaccagcccggccatcagcccagat
gacagtgacgaggagaacaactga
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integrated database retrieval system
