Oncorhynchus mykiss (rainbow trout): 110537369
Help
Entry
110537369 CDS
T07259
Name
(RefSeq) transcription initiation factor TFIID subunit 1 isoform X1
KO
K03125
transcription initiation factor TFIID subunit 1 [EC:
2.3.1.48
2.7.11.1
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
110537369
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
omy01001
]
110537369
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
omy03021
]
110537369
03036 Chromosome and associated proteins [BR:
omy03036
]
110537369
Enzymes [BR:
omy01000
]
2. Transferases
2.3 Acyltransferases
2.3.1 Transferring groups other than aminoacyl groups
2.3.1.48 histone acetyltransferase
110537369
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
110537369
Protein kinases [BR:
omy01001
]
Serine/threonine kinases: Other
TAF1 family
110537369
Transcription machinery [BR:
omy03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
110537369
Chromosome and associated proteins [BR:
omy03036
]
Eukaryotic type
Histone modification proteins
HATs (histone acetyltransferases)
110537369
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3591
Bromodomain
TBP-binding
zf-CCHC_6
Cac1_C
Motif
Other DBs
NCBI-GeneID:
110537369
NCBI-ProteinID:
XP_021479036
Ensembl:
ENSOMYG00000022750
LinkDB
All DBs
Position
12:29154341..29176633
Genome browser
AA seq
1941 aa
AA seq
DB search
MSDSDSDEDQDRPFSLTGFLFGNINEDGQLEGDSVLDTESKKHLAGLGSLGLGNLITEIT
ASEEDDPDEDGDTGGTNAEGWVKNDADAVDYSDINEVAEDETKKYRQAMGSLQPTRRTDD
EDDYDADCEDIDAKLMPPPPPPSLPTPGGKKEDSSPTAASVGDEGDGIILPSIIAPSSLV
DKVDFSSSSDSESETDRPSTGSGSGGPPTCLSLPLAGIMQKDAAKALPGVTQLFPEFRPG
RVLRFLRLFGPGKNMPSVWRSARRKRKRKHRDPQPETPPPEGAEPMEQQGPEKKSGWDYE
YAPPPPPEQCLSDDEITMMAPVESKFSQTAGDGDKVTESRPKVAEWRYGPAQLWYDMMGV
PEDGSGFHYGFKLKEEEDEQEKQERPEPPPPFSQPPKEEGSGDEKDEQALENELFLMVTQ
LQWEDDIIWNGEDVKHKGTKTQRASLAGWLPSSMTRNANAYNAQQGLCRSNSQLVPPTPP
PMPKAPSIGSGSKRDKHHHDHYASHEDDAPWFSIFPIDNEELVYGRWEDNIIWDDQAMDR
MLSPPVLTLDPNDENIILEIPDEKESERTSHSPSKENKKESALKKSRILLGKTGVIKEEP
QQNMSQPEVKDPWNLSNDEFYYPKQQGLRGTFGGNIIQHSISAVELRQPFFPTHMGPMKL
RGFHRPSLKKYSFGTLSQPGPHAAQPLLKQIKKKAKMREQERQASGGGDMFFMRTAQDLT
GKDGDLILAEYSEEYPPLIMQVGMATKIKNYYKRKPGKDPGAPDCKYGETVYCHTSPFLG
SLHPGQLLPAFENNLFRAPIYLHKMPETDFLVLRTRQGYFIRELVDIFVVGQQCPLYEVP
GPNSKRANTHIRDFLQVFIYRLFWKSKDRPRRIRMEDIKKAFPSHSESSIRKRLKLCADF
KRTGMDSNWWVLKPDFRLPTEEEIRAMVSPEQCCAYYSMLVAEQRLKDAGYGEKSFFAPE
EENEEDFQMKIDDEVRTAPWNTTRAFIAAMKGKCLLEVMGVADPTGCGEGFSYVKVPNKP
TQQKAQDDREPQPAKKTVTGTDADLRRLSLKNAKQLLRKFGVPEEEIKKLSRWEVIDVVR
TMSTEQARSGEGPMSKFARGSRFSVAEHQERYKEECQRIFDLQNKVLESTEVLSTDTDSS
SAEDSDFEEMGKNIENMLQNKKTSSQLSREREEQERKELQRMLMGEESDHKGRKARKGFS
SALSTGSHKDDDTSSVTSLNSSATGRRLKIYRTFRDEDGKEYVRCETVRKPSVIDAYTRI
RTTKDDDFIKKFALFDEQHREEMRKERRRIQEQLRRLKRNQEKDRFKSPPEKKAKKIKER
PDLKVKLKCGACGAIGHMRTNKFCPLYYQTNAPPSNPVAMTEEQEEELEKTVIHNDNEEL
IKVEGTKIVLGKQLIESADEVRRKSLVLKFPKQQLPPKKKRRVGNNVHCDYLNRPHKSIH
RRRTDPMVTLSSVLESIINDMRDHPNTYPFHTPVNAKVVKDYYKIIPRPMDLQTLRENVR
KRVYPSREEFRENVELIVKNSATYNGAKHPITQVAQTMLDLCDEKLKEKEDRLVRLEKAI
NPLLDDDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVQPMDLENVRK
NISKHKYQNRDVFLFDVSLVHTNSVKYNGPDSPYTNTALEIVNVCKQTLAEYDEHLTQLE
KDISTAKEAALDAADLDSLDPMTPGTYTPQGRHRRLGEEESDVDIEGFEEEDDDGKPKTP
APAEDGEGDLEDEEDEEEMLLLPPRRRLQGHEDDDYDEDEGSSRPAQASVLYQDLLMSDG
EDDASEEEGDNPFSSIHLSESGSDSDREVEVRPPPPPRPHHETARMGLEQDESMMSYGEE
LPDETHLEDSNVSYGSYEGQTHTQTSSMGNGEGYGISEEEEEEAARRRGPSVLSQVQLSE
DEEDSEEFRSIGGESDLDSDN
NT seq
5826 nt
NT seq
+upstream
nt +downstream
nt
atgtcggactcagacagtgatgaagaccaagaccgccccttctctctcactggctttctc
ttcgggaacatcaatgaagatggtcagctggagggagacagtgtgctggacactgagtcc
aagaagcacctggctggcctgggctctctgggcctgggcaacctcatcacagagatcaca
gccagtgaggaggacgatcctgacgaggatggagacacaggtggcacaaatgcagaggga
tgggtgaagaacgatgccgatgcagttgattattctgacatcaacgaggtggctgaagat
gagactaagaagtatcgtcaggccatgggcagcctgcagcctaccaggagaacagatgat
gaggatgactatgatgcggattgtgaggatattgatgccaagcttatgccccctccacct
cctccaagtctccccacgcctggtggcaagaaagaggattcctctcctacggctgcaagt
gttggggatgaaggagacgggatcatcctgccctccatcattgctccctcctctctagta
gacaaagtggacttcagcagctcctcagattctgagtcagagacggaccgcccctccaca
ggctctgggtctgggggtcctccaacctgcctcagcctgcccctggctggcatcatgcag
aaggatgctgccaaagccctgcctggcgtcacacagctcttcccagagttcaggcctgga
agggtgctgcggttccttcgactgtttggccctgggaagaacatgccgtcggtgtggcgg
agtgcacgacgaaagagaaagaggaagcaccgcgacccccagccagagacacccccacca
gagggcgctgagcccatggagcagcagggaccagagaagaagtctggctgggactatgaa
tacgccccacctccacccccagaacagtgcctgtctgatgatgagatcacaatgatggcc
ccagtagagtccaagttctctcagaccgctggagacggggacaaggtgacagagtccagg
cctaaggtggcagagtggcgctatggtccggcccagctctggtacgacatgatgggggtc
cctgaggatggaagtggtttccactatggcttcaaactgaaggaggaggaagatgagcag
gagaagcaggagaggccagaaccaccaccaccattttcacaacctcccaaagaggaggga
agtggtgacgaaaaggatgaacaggccctggagaacgagctctttctgatggtcacccag
cttcagtgggaggacgacatcatctggaatggagaggacgtgaaacacaaaggcactaag
acccagcgagccagtctggcagggtggctgccttccagcatgacgcgtaatgccaatgcc
tacaacgcacagcagggtctgtgtaggagtaactctcagctggtgccccccactcctcca
cccatgcccaaagccccctccatcggctctggctccaagagagacaaacaccaccatgac
cattatgcctctcatgaagatgacgccccctggttctccatcttccccattgacaatgag
gagctggtgtacgggcgctgggaagacaacatcatctgggacgaccaggccatggaccgc
atgctctcaccccctgtcctcaccctggaccccaatgatgagaacataattttagaaatc
ccagatgagaaggagtctgagcgtacgtcccactccccgtccaaggagaacaagaaggag
tcggcactgaagaagagtcgcatcctgctggggaagactggggtcataaaggaggagcct
caacagaacatgtcccagcctgaggtgaaggacccatggaacctgtccaacgatgagttc
tattaccccaagcagcagggcctgaggggcaccttcggtggcaacatcattcagcactcc
atctctgcagttgagctgaggcagccgttcttccctactcacatgggacccatgaagctg
cgtgggttccaccgaccctctctgaagaagtactcgttcgggacgttgtcccagccaggt
ccccacgcagcacagcccctactcaaacagatcaagaagaaggccaagatgcgagagcag
gaacgccaggcttctggtggcggtgacatgttcttcatgcggacagctcaggacctgaca
gggaaagacggagacctgattctggcagagtacagcgaggaataccctccgctcatcatg
caagtcggcatggcaaccaagatcaagaactactacaagagaaaaccaggcaaggaccct
ggagctccagactgtaagtacggagagacggtgtactgccacacctctccctttctgggc
tccctgcaccccgggcagctgctcccggcttttgagaacaaccttttccgcgcccccatc
tacctccacaagatgccagagacagatttcctggtgctgcgtacacggcagggctacttc
atcagagagctggtggacatctttgtggttggacagcagtgtccgctctatgaggtccct
ggacccaactccaaacgagccaacacccatatcagagacttcctgcaggtgtttatctat
cgactgttctggaagagtaaagatcgccctaggagaatccgcatggaggacataaagaaa
gccttcccctcacattcagaaagcagcatccgcaaacgcctaaaactctgtgctgacttc
aagcgtacagggatggactctaactggtgggtgctgaagcctgacttcaggctgcctact
gaggaggagatcagggccatggtgtctccagagcagtgttgtgcctactacagcatgctg
gtggcagagcagagactgaaggatgctggatatggtgaaaagtccttctttgctccagag
gaagagaacgaggaagacttccagatgaagattgatgatgaggtccgcacagccccttgg
aacacgactcgagccttcatcgctgccatgaaggggaagtgtctgctggaggtcatgggg
gtggccgaccccacaggttgtggagagggattctcctacgtcaaagtgcccaacaagccc
actcaacaaaaggcccaggatgaccgggagccacaacccgctaagaagactgtgacaggg
acagacgctgatctgagaagactgtcactaaaaaacgccaagcagctgctgcgcaagttt
ggtgttccagaggaggagataaagaagctgtctcgttgggaggtgattgacgtggtgagg
accatgtctacagagcaggcacgctctggcgaggggcccatgagcaaatttgcccgcggg
tcccgcttctctgtagccgaacaccaggagcgctacaaggaggagtgccagaggatcttt
gacttgcaaaacaaagtattagagtccacagaggtcctgtccacagacacagacagcagc
tcagcggaggacagtgactttgaggagatggggaagaacattgagaacatgctgcagaac
aagaagaccagctcccaactgtccagagagagggaggagcaggaaaggaaggagctgcag
aggatgctgatgggagaggagagtgaccacaagggacgcaaagcacgcaagggcttctct
agtgctttgtccacgggctcccataaagatgacgacacgtcctcggtcaccagcctgaac
tcgtccgctacgggacggcgcctcaaaatctaccgcaccttcagagacgaggacggcaag
gagtatgtccgctgtgagactgtccgcaaaccctccgtcatagacgcctacaccagaatc
agaaccaccaaggacgacgacttcataaagaagtttgcgctgtttgacgagcaacataga
gaggagatgaggaaggagcgccggcggatccaggagcagctgaggaggctgaagaggaac
caggagaaggacaggttcaagagcccccctgagaagaaggccaagaagatcaaggagagg
ccagacctcaaggtaaaactgaagtgcggagcttgcggtgccatcgggcacatgcgaacc
aacaagttctgcccactgtactaccagaccaatgctccgccctccaacccggttgccatg
acggaggagcaggaggaggagctggagaagactgtcatccacaatgacaacgaggaactc
attaaagtggagggaaccaagatcgtcctgggcaagcagctcatcgagagtgctgatgag
gtgcgcaggaagtccctggtgctgaagttccccaaacagcagcttccccccaagaagaag
agacgtgttgggaacaatgtacactgtgactacctaaataggccccacaaatccatccac
cgcagacgcactgaccccatggtcaccctgtcctcagtcctggagagtattatcaacgac
atgcgggatcaccccaatacataccccttccacacaccagtcaatgccaaggtggtgaag
gactactataagatcatccctcgtcccatggatctgcagacgctacgggagaatgtgcgc
aagcgtgtgtacccctcccgggaagagttcagagagaacgtggagctcattgtcaagaac
agtgcgacatacaatggtgccaagcatccaataacccaggtggctcagactatgctggac
ctttgtgatgagaaactgaaagagaaggaagacaggctggtgagactggagaaagccatt
aaccccctgctggacgatgatgaccaggtggccttttccttcatcctggacaacatcgtc
actcagaagatgatggccgtgcctgactcttggccgttccaccatccagtcaacaagaag
tttgttccagattattacaaagtgatagtccaacccatggacctagagaatgtccgcaag
aacatatccaaacacaagtaccagaaccgggatgtgttcctgtttgatgtcagcctggtc
cacaccaacagtgtcaagtacaacggaccagacagcccttacaccaatacggccctggag
atagtcaacgtatgcaagcagaccctggcagagtatgatgagcacctgacccagctggag
aaggacatctccacagctaaagaggcagctctggatgcagcagacctggatagcctggac
cccatgactcctggaacctacacaccacagggtcgtcatagaaggctaggagaggaggag
tcggacgtggacatcgagggcttcgaggaggaggatgacgacgggaagcccaagacacca
gctcctgcagaggatggcgagggagacctggaggatgaggaggatgaagaggagatgctg
ctgctgccgccccgcagaaggctgcagggccatgaggatgatgattatgacgaggatgaa
ggctccagtcggccagcccaggccagcgtgctgtaccaggacctgctcatgtcagacgga
gaggatgacgccagcgaagaggagggagacaacccgttctcctctatccacctgtcagag
agtggcagtgactcagacagagaggtcgaggtgcgtcccccgccccctcccagaccccac
catgagacggcccgcatgggcctggagcaggacgagagcatgatgtcatacggggaagag
ttgccggatgagacccacctggaggacagtaatgtcagttatgggagttatgagggtcag
acccacacccagacctccagcatgggcaatggagagggctacggcataagtgaggaagag
gaggaagaggcagctcggaggagaggtcccagtgtgttgtcccaggtgcagctgagtgag
gatgaggaggacagcgaagagttcaggtccattgggggagaaagtgacttagactcagac
aactag
DBGET
integrated database retrieval system
