Oncorhynchus nerka (sockeye salmon): 115103205
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Entry
115103205 CDS
T07952
Name
(RefSeq) nucleoprotein TPR-like isoform X1
KO
K09291
nucleoprotein TPR
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115103205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115103205
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
115103205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_MLP1_2
GAS
Fez1
ERM_helical
Apo-CIII
Motif
Other DBs
NCBI-GeneID:
115103205
NCBI-ProteinID:
XP_029479840
EnsemblRapid:
ENSONEG00000038896
LinkDB
All DBs
Position
LG20:complement(62320165..62343423)
Genome browser
AA seq
2569 aa
AA seq
DB search
MAAVLLQVLERTELNKLPKAAQNKLEKFLTDQKNEIESLKTQHERFKADCEQQYFDVEKR
LAESQEQIVSHTRNYQTLKEENTKLIEELNNLKGVDVESSEEKESQQPSKAKYEIEAERR
ELARLLEKRTQDVENLTEDVKRLNDKLVETNTAKIDLQLKLDEIQSSEVSIQHREKRMEQ
EKELLQNQNTWLNSELKTKTEELLSVSREKGKEILELKCSFECKKDEVTRLQTQVTNLKK
SSENLQKRVEDLMTKLKEAKDHHSTMEEKYRNEQNAHIKLSNLYKGSASDAESKNEELNR
AVEELHKLVKEAGDARQNMEKKLADMEGSKSKQEAELKEKFKKMELENANLRASDKKRSM
PVLTEEELDSMCPTAAAVAKIVKPGMKFMELYNAFVDIQDQLLVEKQENRRVTRVLDEIV
QEVEEKAPILKRQREDYESMQRSMNSLCAKLEQARTEIHSLQKETDEAKKHCSNLEKDNQ
HSERELEDMSQQVRVLLVELEEARGNPVVREETMNLSSSSEIINPRQVSFRSVEELQRQN
QSMLARLRELGEKMEREKTEANSARVTQLEQQLEKIQKELEIIKEQRNQQKQLADSNGRQ
RDMYRILLSQSTGFNLPPQGPTQEAAPQMYTPSRPSFPPPTRSTPMRASAAESSQTTQAK
AALKQLNDSFTTYKNEKAVNDRMLNEQNEKLQEQLSAFRSQKAKLSTQLEFASKRYEMLQ
ENVNGYRREIAALHDKSQKMAATAQKHEQIIHTMTQDLRAANEKLALAEVRGENMKKERD
MLKSAESRLNQEKEAMMAEQRNQNLLLTNLKSIQLTMERTETETRQRLNSQIERLERELT
QFKKKLAEEVEQRHMLGRNQDAQLLEAKKQLEAQCALHQKTKELLKNAEQQANLLKQQLS
HAESQNQGSGLGQGQSLGQTNPRAPIRAPLRAPSQTQSQEAQAKLQSELEEVRGRLQQAE
KQISDLQERLQNATTNVEQYRTVVLSLEESLSKEKQARSPVETRLKEAQEFQRGLEKKLV
EAEKEKQELREEKRKAMDIVEKQVNELKRTMKNLQSELQEAEERKAAAITQEQKAMQDSL
QQGKLAVEAQNKYERELMLHAADVEALQAVKKQGLQGNQSRKQLEDKAKQTTTQLQEART
NWYQLEKKLKEDLSKQQKRADELQKQNGLLHQQMESLGAKMAATVQQQQQASRESSLNLS
FSEEGKSQEQILEILRFVRREKEIAETQFEVAEVETLRYKQQVEHQDRELKELQESLNAE
REKLQLTAKTMAQHDEKMKRMENLNVLVETNKMLKEERERLEQELHQTQAKVRKLEADIT
PLQDSNSELSVKNGMLQAEKKLLEEDSKRWKARTQQLVSQQKDTDQEENKKLHSEREAHL
KRIQQLSEETGRLKAEVARTHASVITAQSQAQNLKENLGKVTTERDAKHLDIQEKCKTIT
QVKKIGRRYKTQYEELKVQHDKLVAEAAAKPAQEEVLQAVQQAQQQAQQAQQASAQEIQS
LKDSLSQAETKVKDLEGQLKNVQEAVNERNTEMGRLKQELTRLQEQSTQAQGTQSEVTRL
KQELARLQEQSAQGTQGEVTRLKQELSRLQEQSTQAQGTQSEVTRLKQELARLQEQSTQA
QGTQGEVTRLKQELTRLQEQSTQAQGTQGEVTRLKQELTRLQEQFTQAQGNQGEVTRLKQ
ELTRLQEQSTQAQGEVTRLKQELTRLQEQSAQGTQGEVTRLKQELQEKTAQEESLRQQMA
DKEEKTKKVFMGAKQKINQLNIAKEHLTKEVEELKQQREEQEVRLSALKSQYEGRLHRQD
REIRELRDHRDEQPQRDESQDQGKNKTQEQQQRAPDQRQINQRTSQAADRGSGSSGSSEQ
PPTANIKPTTVSGGAPSKPSPIPGNKSTPRASIRPMVPITMPTPTATVMPHTQSESQEVL
QSSESGTPVEHVSVFGSTSGSVRSTSPSVQNITHSQFQPISSQATAFVQPTQQQQAPPTA
ELASQEIEAGPSGQVERPSTSTAVFGSAIATGGSAGPKRAREVELEARAESADIALENPD
EPPIPKKLRIIQRVGLEEENEEGTDGEAEGSGENQETPDGSQELPDVSFPVLGEVEEEDD
GVSQSVPSDHQVTPQPSDTQDSSEERQPDVIIIDTDSSSREEEEEEAEQYEEEVEEEKDD
DDDEDQGMGREESNEGSGDANEPFEGDETGPETSEPVSENEESMGAIDSTSQKQADSQSG
EGSSSTTESFPMAMSDPPKELLQPTASTTSTFSFSTSPFSPSSSLRLPQSVPRRPPHPLP
PRLYIQPPGPELGLGPPPTQRLSAPIRRQSVGRGPQLTPGIGNMQHFFDDDDRMVPSTPT
LVVPHRTDGFAEAIHSPQVAGVPRFRFGPPEDMPQASSSHSDLGQLASQGGLGMYESPLF
LAAHDEESGGRSVPTTPLQVAAPVTLFNESHPSDAQDMASQSVPMVTTSTSHHGLAVPGG
EAIPGDDGDEVFMEADSEGRSGEASMDSQAEMDSAQPSDDASLPSTSQEPTSSSADTSSS
VQAKPSGRPLAQHSLPMRIANRGRALIRRGGMGFLRAGRGPFGRGNLPR
NT seq
7710 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagttctgcttcaagttttggagcgtacagagcttaataaactccctaaagct
gctcaaaacaaattagaaaagttccttactgaccagaagaatgaaatcgaatccctcaaa
acgcagcacgagcggttcaaagcggactgtgagcagcaatactttgacgttgagaagaga
ttggcagagagtcaggagcagattgtgtctcacacccggaattaccagactctcaaagag
gagaataccaaactcatcgaagagctgaacaatctgaaaggtgtggatgtggaatcgtca
gaggagaaggaatcacagcagccgagcaaagccaaatatgagattgaggccgaaaggcgg
gaactggctcgtctgcttgaaaagagaactcaagatgtggaaaatctcaccgaggatgtc
aagcggctaaatgacaagctggtggagaccaacacagccaaaatagatctacagctcaaa
ctggatgagatccaatcttctgaggtctccattcagcaccgtgagaaacgtatggagcag
gagaaggagctactgcagaatcagaacacgtggctgaactctgaactgaagaccaagaca
gaggagctgctatcagtctccagggaaaagggcaaggagatcctggagctcaagtgcagc
tttgagtgcaagaaggacgaggtcacaagacttcaaacccaagtcaccaatctgaagaag
agcagtgagaacctgcagaagagagtggaggacctgatgacaaaactgaaagaggctaaa
gaccatcatagcaccatggaggagaagtaccgcaatgaacagaatgcccacatcaagctc
tccaacttgtacaaggggtcagcatcagatgcagagtccaagaacgaggagttgaacagg
gccgtggaggagctgcacaagctggtgaaggaggctggtgatgcgagacagaacatggag
aagaagctggcagacatggaggggtcaaagagcaaacaggaggctgagctgaaggagaag
tttaagaagatggagctggagaacgccaacctgcgtgcctcagataagaaaagaagcatg
ccagtgctcacagaggaagagttggactccatgtgtccgaccgcagctgctgtggccaag
attgtcaagcctggaatgaagttcatggagctgtacaatgcattcgtggacatccaggac
cagttgctcgttgagaagcaggagaaccggcgtgtgacgcgcgtgctggacgagatcgtg
caggaggtggaggagaaggcgcccatcctaaagcgccagcgggaggactatgagagcatg
cagaggtccatgaacagcctctgtgccaaactggaacaggccaggacggagatccacagc
ctgcagaaagagacagatgaggccaaaaagcactgctccaacctggagaaggacaaccag
cactctgagagagagctggaggacatgtcccagcaggtgcgcgtcctgctagtggagctg
gaggaggcgcgtggcaacccggtggtccgcgaggagacgatgaacctgagcagtagctct
gagatcatcaacccacgccaggtttccttccgcagtgtggaggagctgcagcggcaaaac
cagagcatgctggcacgtctccgggagctgggggagaagatggagagagagaagaccgag
gccaattctgcacgtgtgacccagctggaacagcagctagagaagatccagaaggagctg
gagattataaaggagcagagaaaccagcaaaagcagctggctgactccaacggccgccag
agagacatgtaccgcatcctgctgtcccagagcaccggcttcaacctcccaccacaaggt
cctacacaggaggcagccccccagatgtacacccccagccggccctccttcccccctccc
accaggtccacccccatgagggcttcagccgctgagtcttcccagaccacccaggccaag
gctgctctcaaacagttgaacgactccttcaccacatacaagaatgagaaggcggtgaac
gacaggatgctgaacgagcagaacgagaagctacaggagcagctgtctgcgttccgctcc
cagaaggccaagctctccacacagctggagttcgcctccaagagatacgagatgctgcag
gagaatgtaaacggctacaggcgggagatcgctgctctgcacgataagagccagaagatg
gccgccacggctcagaaacatgagcagatcatccacaccatgacccaggatctccgggca
gccaatgagaagctggccttggcagaggtgcgtggtgagaacatgaagaaagagagagac
atgctgaagtcagcagagtccagactgaaccaggagaaggaagccatgatggctgagcag
cgcaaccagaacctcctgctcaccaacctcaagtccatccagctgacgatggagcgtaca
gagactgagaccaggcagcgtctgaacagccagatagagagactggagagagagctcacc
cagtttaagaagaaattggctgaggaggtggagcagaggcacatgctgggccgtaaccaa
gacgctcaactgctggaggccaagaagcagctagaggcccagtgtgccctgcaccagaag
accaaggagctgttgaagaatgctgagcagcaggctaaccttctgaaacaacagctcagc
catgctgaaagccagaaccagggttcaggtctgggccagggtcagagcctgggccagact
aacccccgggcacccatcagagcaccgttaagagctccatctcagacccagtcccaggag
gcccaggccaagctccagtcagaactagaggaggtgcgcgggcgtctgcagcaggccgag
aagcagatcagtgatctgcaggagcgcctgcagaacgcgaccactaacgtggagcagtac
cgcaccgtggtgctcagcctggaggagtccctcagcaaagagaaacaggctcgttctcct
gtggagactcgtctaaaggaggcccaggagttccagcgtgggctggagaagaagctggtg
gaggctgagaaggagaaacaggagctccgtgaggagaagaggaaggccatggatattgtg
gagaaacaggtgaatgagctgaagaggaccatgaaaaacttgcagtcagagctgcaggag
gcggaggagaggaaggctgcagccatcacccaggaacagaaggccatgcaggacagcctg
cagcagggcaagctggcagtggaggcccagaacaagtacgagcgggagctgatgctgcat
gcggctgatgtggaggcgctacaggcggtcaagaaacaaggcctgcaggggaaccaaagc
aggaagcagctggaggacaaggccaaacagaccaccacccagctacaggaggctcgcacc
aactggtaccagctggagaagaaacttaaggaggacctgtccaagcagcagaagcgggca
gacgagctgcagaagcagaatggcctgctgcaccagcagatggagagcctgggagccaaa
atggccgccacagtacagcagcagcaacaggctagtagggagagcagcctcaacctgtcc
ttcagcgaagagggcaagtctcaggaacagatcctggagatcctcaggtttgtgcgtcgt
gagaaggagattgcagagacacagtttgaggtggccgaggttgagacactgcgctacaaa
caacaggttgaacaccaggaccgagagctgaaggaactacaagagagcctcaacgctgag
agagagaaactacagctgacagcgaagactatggcccagcacgatgagaaaatgaagagg
atggagaacctaaacgtgctggtggagaccaacaagatgctgaaggaggagagggagcga
ctggaacaagagctgcaccagacccaggctaaagtgcgtaagctggaggcggacatcact
cccctgcaggactccaactctgagctgagtgtgaagaatggcatgctgcaggctgagaag
aaactgttggaagaggacagcaaacgctggaaggcccgcacacagcaactggtgagccag
cagaaggacacagaccaggaggagaacaagaagctgcactctgagagagaggcccacctc
aaacgcatccagcagctctctgaggagactgggagactgaaggctgaggtggccaggacc
catgcgtcggttatcacagcccagagccaggcgcagaacctgaaggagaatctgggcaag
gtgaccaccgagagggatgcgaagcacctggacatccaggagaagtgcaagaccatcacg
caggtcaagaaaatcggacgacgctacaagacgcagtatgaggagctcaaagtgcagcac
gacaagctggtggcggaggcagcagccaagccagcccaggaggaggtgctgcaggctgtg
caacaggcccagcagcaggctcaacaggcccagcaggcctctgcccaagagatccagagc
ctgaaggactccctcagccaggctgagaccaaggtcaaagacctggaaggacaactgaaa
aacgtacaggaggcggtgaatgagcgcaacacagagatggggcggctgaaacaggagctg
acccggctccaggaacagtctacccaggcccaggggacacagagtgaagtgacccgactg
aaacaggagctggcccgcctccaggaacagtctgcccaggggacccagggtgaagtgacc
cggctgaaacaggagctgtcccggctccaggaacagtctacccaggcccaggggacacag
agtgaagtgacccgactgaaacaggagctggcccggctccaggaacagtctacacaggcc
caggggacccaaggtgaagtgacccggttgaaacaggaactgacccggctccaggaacag
tctacccaggcccaggggacccagggtgaagtgacccggctgaaacaggagctcacccgg
ctccaggaacagtttacccaggcccaggggaatcagggtgaagtgacccggctgaaacag
gagctgacccggctccaggaacagtctacccaggcccagggtgaagtgacccggctgaaa
caggagctgacccggctccaggaacagtctgcccaggggacccagggtgaagtgacccgg
ctgaaacaggagctgcaggagaagactgctcaggaggagtcgctacggcaacagatggcc
gacaaggaggagaagaccaagaaggtcttcatgggcgccaagcagaagatcaaccaactc
aacattgcgaaggagcatctgaccaaggaggtggaggagctgaagcagcagcgggaggag
caggaggtgcgtctgagtgctctcaagtcccagtatgagggccgtctgcaccgacaggac
cgagagatcagggaactccgagaccaccgtgacgaacaacctcagagagacgagtcccag
gaccaggggaaaaataagacccaggagcagcagcagagagctccagatcagaggcagatc
aaccagaggacttcccaagctgcagacaggggaagtggttcttccggctcttcagagcag
ccccccactgccaacatcaaacccaccacggtgtcgggcggtgcccccagtaaaccttcc
cccatccccgggaacaagtccacccccagggccagcatccgacccatggtgcccataacc
atgcccacccccacggccactgtcatgccccatacacagtctgaaagccaggaagtgctg
cagtcctctgagagtggaacccccgtggaacacgtgtctgtgttcggcagcaccagcggc
tcggtccgctccaccagccctagcgtccagaacatcacgcactctcagtttcagccaatc
agcagccaggccaccgccttcgtccagccaacccagcaacagcaggccccgcccaccgct
gagctggccagtcaggagatagaggcaggccctagtggtcaagtggagaggccctccact
tctacggccgtatttggctctgctattgctacagggggctctgctgggccaaagcgtgcc
cgcgaggtggagctggaggctcgggcagagagcgccgacatagccctggagaacccagac
gaaccacccatccccaagaagctccgtatcatccagagagtgggactggaggaggagaat
gaagagggcactgatggagaggctgaggggtcaggggagaaccaggagactccagatggc
agccaggaactaccagacgtgtcctttcctgtactgggagaggtggaggaagaggatgac
ggggtgtcccagtctgtcccctcagaccaccaggtgaccccccaaccctctgacacccag
gactccagcgaagagcgccagcctgacgtcatcatcatcgacacagacagctccagtcga
gaagaagaggaggaagaggcagagcagtatgaggaagaggtggaggaagagaaggatgat
gatgatgacgaggaccaggggatgggaagagaggagagcaacgaggggagcggagacgcc
aacgagccgtttgaaggagacgagacgggccctgagacctcggagcctgtctcggagaac
gaggagagcatgggagctatagactccacctcccagaaacaggctgactcacaaagcggt
gaggggagcagcagtaccaccgaatccttccccatggccatgtccgacccccccaaagaa
ctactacagcctaccgctagtactaccagcactttctccttctctacctcccccttctcc
ccctcctccagcctgcgcctgccccagtctgtcccccgccgacccccacaccccctgccc
ccacgcctctacatccagccccccggccctgagctgggcctgggacctccacccacacag
aggctgtctgcgccaatccgccggcagtctgtaggcagaggaccccagctcacgcctggg
ataggcaacatgcaacacttctttgatgacgatgaccggatggtccccagtacgcccact
ctggtggtgccccaccggactgatggctttgctgaggccatacattctccacaggtagca
ggagttcccaggttcaggtttggtcctcctgaagacatgcctcaggccagctcgtcccac
tctgacctcggacagctcgcctcacaaggaggtctggggatgtacgagagtccactgttc
ctggccgctcacgacgaggagtctggagggaggagtgttcccaccacacccctgcaggtt
gctgccccagtgacgctcttcaatgaatcccacccctctgatgcccaggacatggcatcc
cagtctgttcccatggtgacgacatccacgagccaccacgggctggcagtccccggcgga
gaggccatcccaggagatgacggtgatgaggtgttcatggaggcagatagtgaaggtagg
agtggtgaagcgtccatggatagccaggctgagatggactctgcccagccgtcagacgat
gccagtctgccctccacaagccaggagcccacctccagctctgccgacaccagcagtagt
gtgcaggccaagccctccggccgccccttggcccagcactctctgcccatgagaatagcc
aacaggggcagggcgctcatccgcagaggaggtatgggcttccttcgagcaggaagaggc
cccttcggtagaggaaacctaccccgctaa
DBGET
integrated database retrieval system
