Oncorhynchus nerka (sockeye salmon): 115108142
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Entry
115108142 CDS
T07952
Name
(RefSeq) LOW QUALITY PROTEIN: vascular cell adhesion protein 1-like
KO
K06527
vascular cell adhesion molecule 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
115108142
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
one04090
]
115108142
04091 Lectins [BR:
one04091
]
115108142
CD molecules [BR:
one04090
]
Proteins
115108142
Lectins [BR:
one04091
]
I-type lectins (Siglecs)
115108142
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
C2-set_2
V-set
C1-set
ICAM1_3_5_D2
ICAM_N
Peptidase_A4
REJ
Polyketide_cyc2
Motif
Other DBs
NCBI-GeneID:
115108142
NCBI-ProteinID:
XP_029488020
EnsemblRapid:
ENSONEG00000007070
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All DBs
Position
LG24:complement(36664581..36673979)
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AA seq
741 aa
AA seq
DB search
MYLILLWVLILPVTAFAFHMELKPKNALLKVGDRHELQCSVKDCNEKVTISWALLEDKPV
FAKIHTSGSESVAVFDPVATAHDDTLLCKGSCGESTKQQRAVVKVYSFPEAPVISGHDRL
LLGQTNTLTCEVTDAYPAEHLRLEWLRGDSMLQTDAESVVSTYTFTPTPEDKQASITCRA
THDQEGVPDDEKTKETSVSLTVLYAPQITSISELTVVGVGSSPTLMCHAEGNPRPEIQWK
AIGPHGQAVIVGQSEELALTEMTLVDSGQYECVASNTIGNSRASVNVIVEAPPINTSIKV
SPASKVKEGENVTVSCLSDGAPVGRMVLRRLSEDQDVALQSSNGSSTSFTLSSALLADSA
LYQCEAFNEHGSQKVSTLLSVEAYPLEVEMVSGVMAEMGSKLVLSCLASGCPQPAFSWRS
MLDMPVHSRARNQDSLSQLHLGPLGLAHEQAYTCEAKCGSVIKSKQAEVKVFSFPSDPII
ENPGPFLEDGEATLYCSVADVYPASHVQIQWLDGETELHSGVGRYSSELQNVTSTLSFSV
EPEDQGRRITCRVGLQMDVVHQSRRERKAVTVLELHYAPRGTTITVSPDSEVKEGESVTV
SCLSDGAPVGWMVLRRLSEDQDVKLQSHNGSSTSFTLSSALLADSALYQCEAFNEHGSQK
ASTHVTVKAPPRNTTVLVYPSTEVQEGQNVTVCCRSVSFPPPXGGFEKTGQWHRALLPGW
ELPAGEPYAQRYRPIPGECDQ
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgtatctcattctgttatgggtattgatactaccagtaacagcatttgcatttcatatg
gagctgaaaccaaagaatgcacttttgaaagtcggtgataggcatgagctgcaatgctcg
gtgaaggattgcaatgaaaaagttaccatctcctgggctttgctggaggacaagccagtg
tttgcgaaaatacacacctccgggtcggaatcagtggcggtctttgaccctgtggcgaca
gcacacgatgacacacttctctgcaaaggcagttgcggagaatcgaccaaacaacagcgt
gcggttgtcaaagtatactcatttccagaggcccctgtcatatcaggccatgaccgactt
ctcttgggccagaccaacactctgacatgtgaggtgacagacgcttatcctgcagagcac
ctgaggcttgagtggctgcgaggagacagcatgctccagacagatgcagagtctgttgtg
tccacctacacgttcacgcccacccccgaggacaaacaggccagcatcacatgcagagcc
actcacgatcaggagggtgtgcctgatgatgagaagaccaaggaaacctctgtttctctc
acagtgctttatgcaccacagattacgtcaatatctgagctgactgttgtgggagttggc
tccagtcccacattgatgtgccatgctgaagggaaccccagaccagagatacagtggaag
gccattggtccgcacggacaggctgtcatagtagggcagagcgaggagcttgcccttaca
gagatgacactggtggattctggtcaatatgagtgtgtggcaagcaacaccattggaaac
agcagagccagcgtgaacgtcattgttgaagctcccccaataaacacctccatcaaagta
agcccagccagtaaggtgaaagaaggggagaacgtgacggtgtcctgcctgtcagacgga
gctccggtgggacggatggtgctgaggagactctctgaggaccaggatgtagctcttcag
tccagcaacggctcctccacctccttcaccctctcctctgccctgctagcagactctgct
ctctaccagtgcgaggccttcaatgaacacggcagccagaaagtcagcaccttgctctcc
gttgaagcgtatcccctggaggtggagatggtatcgggggtgatggctgagatgggatcc
aaactggtgctctcctgcctggcttcgggctgtccccagccagccttctcctggaggagc
atgctggacatgcccgtccacagccgcgcacgcaaccaggactccctctcccagctccac
ctgggcccacttggactggcccacgagcaagcctacacctgtgaggccaagtgtggctct
gtcatcaagtccaagcaagcagaggtcaaggtcttctctttcccctcggatcctatcatc
gagaacccgggaccctttctggaagacggggaggccaccttatattgttctgtagccgat
gtctacccagccagtcacgtgcagattcaatggctcgatggggaaacggagctgcactcc
ggcgtgggtcggtactccagtgagctccagaatgtgacgtcaacgttatctttttcggtg
gaaccggaggaccaggggagacggatcacctgcagagtcggtcttcagatggacgtggtc
catcaaagtcggagagagaggaaagcggtgactgtactggagctccactatgcccccagg
ggaaccaccatcacagtgagcccagacagtgaggtgaaggaaggggagagcgtgacggtg
tcctgcctgtcggacggcgctccagtgggatggatggtgctgaggagactctctgaggac
caggatgtaaagctccagtcccacaacggctcctccacctccttcaccctctcctctgcc
ctgctagcagactctgctctctaccagtgtgaggccttcaatgagcacggcagccagaaa
gctagcacacacgttacagttaaagcacctcctaggaatacaacagtcttggtctatccg
tccactgaggttcaggagggccaaaatgtcaccgtatgctgtcgctctgttagcttcccc
ccacctngtggtggttttgagaaaactggacaatggcacagagctctactccccggatgg
gaacttcctgctggtgaaccttacgcccaaagatacaggcctataccaggtgaatgtgac
caatga
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