Oncorhynchus nerka (sockeye salmon): 115129372
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Entry
115129372 CDS
T07952
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit-like isoform X1
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04010
MAPK signaling pathway
one04210
Apoptosis
one04218
Cellular senescence
one04620
Toll-like receptor signaling pathway
one04621
NOD-like receptor signaling pathway
one04622
RIG-I-like receptor signaling pathway
one04623
Cytosolic DNA-sensing pathway
one04625
C-type lectin receptor signaling pathway
one04920
Adipocytokine signaling pathway
one05132
Salmonella infection
one05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
115129372
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
115129372
04218 Cellular senescence
115129372
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
115129372
04621 NOD-like receptor signaling pathway
115129372
04622 RIG-I-like receptor signaling pathway
115129372
04623 Cytosolic DNA-sensing pathway
115129372
04625 C-type lectin receptor signaling pathway
115129372
09152 Endocrine system
04920 Adipocytokine signaling pathway
115129372
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
115129372
09171 Infectious disease: bacterial
05132 Salmonella infection
115129372
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115129372
Transcription factors [BR:
one03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
115129372
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank_2
Ank
Ank_3
Ank_4
Ank_5
Death
Motif
Other DBs
NCBI-GeneID:
115129372
NCBI-ProteinID:
XP_029515492
EnsemblRapid:
ENSONEG00000014131
LinkDB
All DBs
Position
LG5:complement(9176137..9200104)
Genome browser
AA seq
925 aa
AA seq
DB search
MAEEEPYLPHQPYNFDIDPLWDPLNFPPMSHSNSLRTVTADGPYLQIIEQPKQRGFRFRY
GCEGPSHGGLPGASSEKNRKSYPNIRIFNYQGLARVVVQLVTNSKDAHLHAHSLVGKQCD
KGICIADLQPKDSSISFPNLGILHVTKKNVSKTLEDRMSEAYRMGYNCGIVIHPEMDAFQ
GEFRIPRELTDHQRNLISSAASYQAKEMDLSVVRLMFTAFLPDSDGGFSRRLDPVISDPI
FDSKAPNASNLKIVRMDRTAGCVTGGEEVYLLCDKVQKDDIQVRFYEDDETGLTWEAFGD
FSPTDVHRQFAIVFKTPKYRDLNLQKPTSVFVQLKRKSDNETSEPKPFTYHPQIIDKEEV
QRKRQKTLPNFQDYSGHGGAGGLYRGPGGGGPATGGGGGFFQGYSTYNNYGTSYNSGFSP
GMSGGGAGIKHAPQGRAEDSGDDSDMDDDPASGAVVGVRAKSEDASAGETSEESGAGVEL
GPGDRTGECVLVARLVDVAERQAEALFQYVVTGDVSYLLVPQRQLMTAQDENGDTGLHLG
VIHSQTDAVRSLAQVLSALPGEEVLNMRNNLYQTPLHIAVITQQKAAAEALLLAGADVTL
CDRHGNTALHLAAQQKEGGMVGFLLRHREIVELVDLPNTAGLCSLHLAVLANSLCSLRDL
LVNGGSVEVQERSCGRTALHLATELDNVSLAGCLLLEGNADVDCCTYNGSSPLHTATGRG
SVKLTALLMAAGADPHKENFEPLFFREHDCCMDEEEDEGYIPGTTPLNMAATPEVLEILN
GKEYKPETNAFVFVPPQGDMQSLGSDTKRALCQALECPEDGWEMLAHILGLGILNSAFRL
SSSPASTLLDSYEVSGGKVKDLLEGLRTVGNCSALTVLEGALRETEQAPPAPQSTTKLLE
RVCDLKLDGWEDSGVCDSGVELSTA
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagaggagccttacctacctcaccaaccgtacaactttgacatagatccacta
tgggatcccctgaatttccctcccatgtcacactccaactcactccggacagttacagca
gatgggccctacctccaaatcattgaacagcctaaacagcggggcttcaggtttcgttat
ggctgtgagggaccttctcacggcgggctaccaggggcctctagtgagaagaacagaaag
tcctatcccaatatcagaatctttaactatcaggggttggcacgtgtggtggtacagctg
gtgaccaactctaaagatgcccacctccatgctcacagtctggtgggcaagcagtgtgac
aagggcatctgcatcgcagacctacagccaaaagactccagcatcagtttccccaacttg
ggcatcctccacgtgaccaagaagaacgtgagtaagacactggaggaccgtatgtctgag
gcctacaggatgggctacaactgcggtatcgtcatccatcccgagatggacgccttccag
ggagagttccgcatcccccgagagctcactgatcaccagagaaatctgatcagcagcgca
gcgtcctaccaggctaaagagatggacctgagcgtggtgcgcctcatgttcacagccttc
ctcccagacagtgacgggggcttctcccgtagactggaccccgtcatatcagaccccatc
ttcgacagcaaagctccaaatgcatctaacctgaagatagtgcggatggaccgaacagct
ggctgtgtgacgggaggagaggaggtctacctgctctgtgacaaggttcagaaagatgac
atccaggtgcgcttctatgaggatgacgagacaggtctgacatgggaggcctttggggac
ttctcccccaccgatgtccaccgacagtttgccattgttttcaagacccctaaatacaga
gacctgaacctccagaaacccacctcggtgtttgtgcagctgaagcgtaaatcggacaat
gagacgagcgagcccaagcccttcacctaccatccgcagatcatagataaggaagaagtg
cagaggaagagacagaagaccctgcctaacttccaggactacagcggccacggtggagca
gggggcctgtaccggggaccagggggggggggtcccgctacaggtggaggaggaggtttc
ttccagggctattccacctacaataattatggcaccagctacaactctggcttttcccct
ggcatgagtggtggcggggcaggaattaaacatgctccacaaggcagagcggaggacagt
ggtgatgacagtgacatggatgatgacccggcctcaggggcagtggtgggggtccgagcc
aagtcagaggatgcctctgctggggagactagtgaggagagcggggccggtgtggagcta
ggaccaggggacaggactggagagtgtgtgctggtggccaggctggtggatgttgctgag
aggcaggctgaagccctcttccagtacgtcgtcactggtgacgtcagctacctgctggtt
ccacagcgccagctcatgactgctcaggacgagaacggtgacactggtctccatctgggg
gtgatccacagccagacagacgcagtcaggagtctagcccaggtcctctctgccctgcct
ggagaggaggtccttaacatgagaaacaacctctaccagactcctttgcacatagcggtg
ataacacagcagaaggcggcagctgaggccctcttattggctggggctgatgtcactctg
tgtgatcgccacggaaacacagctcttcacctggccgcccagcagaaggagggaggtatg
gtgggatttctactgagacacagagagatagtggaactagtggacctccccaacacagca
ggactgtgctccctccacctggctgtgcttgccaacagcctgtgttccctcagggacctc
ctggtgaacgggggcagtgtggaggtccaggagaggagctgcggccgcacggcactccat
ctggccactgagctggacaacgtctccctggcaggctgcttgctactggaggggaatgct
gatgtggactgctgcacctacaacggttccagccctctccatacagccacagggcggggc
tctgtcaagctgaccgctctcctcatggctgcaggtgccgatcctcacaaagaaaacttt
gagcccctgttcttcagagagcatgactgctgtatggatgaggaggaggacgaaggctac
atcccagggacaactcctctcaacatggctgccactcctgaggtgttggaaatcttgaat
ggaaaagagtacaagcccgagaccaacgccttcgtcttcgtcccccctcaaggtgacatg
cagagcctgggctcagacacaaagcgggcactatgccaggctctggagtgcccggaggat
ggctgggagatgctggcacacatactgggcctgggcatcctcaacagtgccttcagactc
agctcctcccccgcaagcacgctgctggacagctacgaggtgtctggaggaaaggtcaag
gaccttttggagggactcaggactgtagggaactgctctgctttgacagtactggagggg
gcactgcgtgaaacagaacaggctccaccagccccccaaagcaccacaaaactcttagaa
cgtgtgtgtgatctgaagctggacggatgggaggacagcggagtgtgtgacagtggggtg
gagctctccacagcgtga
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