Oncorhynchus nerka (sockeye salmon): 115131167
Help
Entry
115131167 CDS
T07952
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1-like
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115131167
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115131167
Enzymes [BR:
one01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
115131167
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
115131167
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
CbiA
ATP_bind_1
AAA_16
TniB
MMR_HSR1
AAA_22
AAA_18
AAA_24
Motif
Other DBs
NCBI-GeneID:
115131167
NCBI-ProteinID:
XP_029518622
EnsemblRapid:
ENSONEG00000040289
LinkDB
All DBs
Position
LG6:complement(39352795..39358510)
Genome browser
AA seq
443 aa
AA seq
DB search
MVTEGPEKTGEEGVGAGAGGGGTRFDLEKETELRFEVEAGEKVHLELLTGLAEVFGSELN
RNKKYTFGPGSKIAVFTWQGCSVSLSGKTEVAYISKDTPMLLYLNTHTALEQMRRQAERD
NERGPRVMVVGPTDVGKSTVCRLLLSYAVRLGRRPTLVDLDVGQSGVSVPGTMSALCIER
PADVEEGYSVQAPLVYHFGSTTPGTNIKLYNKLTSCLAEVFSQRCEENRKASVGGCIINT
CGWVKGSGYQALVHCASAFQVDVVLVLDQERLYNELKRDLPHFVRVVLLPKSGGVVERSK
DCRRESRDEKIREYFYGFRSALFFPHAFDVRFSDVRIYKIGAPSIPDSCLPLGMSQDDTQ
LKLVPVTPGRDLTHHVLSVSCADEGEEGAGGGRRGVLESPVCGFIVVTNVDTQAQVMTVL
SPAPRPLPRHTLLIMDIRFIDLK
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atggtgactgagggcccagagaagactggtgaggagggagtgggggctggtgctggtggc
ggggggacgaggtttgacctggagaaggagactgagctgcggttcgaggtggaggccggg
gagaaggtgcatctggagctgctcacaggattggcggaggtctttggctctgagctcaac
cgcaacaagaagtacacgtttggaccaggttccaagattgctgtgttcacctggcagggc
tgtagtgtttctctctcggggaagacagaggtggcgtacatatcaaaggacacacccatg
ctgctctacctgaacacacacactgcactggaacagatgagacgacaggcggagagagac
aatgagaggggaccacgggtaatggtggtggggcctacagatgtggggaagtcgacggtg
tgcaggctgttgctgagctacgctgtcaggctgggcaggaggcccacactggtggacctg
gatgtgggccagagtggggtgtcagtcccgggcacaatgtcagcactgtgtattgagcgt
ccggctgacgtggaggaggggtactcagtacaggcaccgctggtctaccactttggttcc
accactccaggaaccaacatcaaactctacaacaagttgacgtcgtgtctggccgaagtg
ttctcccagcgctgtgaggaaaacaggaaggccagtgtgggcggctgcatcatcaacacc
tgtggctgggtgaagggttctggctaccaggccctggtccactgtgcctcagccttccag
gtggatgtggttctggtgctggaccaggagaggctttacaacgagttgaagcgggaccta
ccgcacttcgtccgagttgtgctgctacccaaatccggaggggtcgtggagcgctctaaa
gactgccggcgtgaatctcgggacgagaagatccgggagtacttctatggttttcgcagt
gccttgttcttccctcacgctttcgacgtgcgcttttctgatgtgcgcatctacaagatc
ggagcgccttccatcccggactcatgcctgccgcttggcatgtcgcaggacgacacccag
ctgaagctagtccctgtgacgcccggtcgtgacctcacacaccacgtgctgagcgtaagc
tgtgctgatgagggggaggagggggctggaggagggcgcaggggtgtgctggagagccca
gtgtgtggcttcattgtggtgactaacgtggacacacaggcacaggtgatgaccgtgctc
tcgcccgcccccagacccctccccagacacacactgctcatcatggacattcgcttcatc
gacctcaaatag
DBGET
integrated database retrieval system
