Oncorhynchus nerka (sockeye salmon): 115135812
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Entry
115135812 CDS
T07952
Symbol
taf1
Name
(RefSeq) transcription initiation factor TFIID subunit 1 isoform X1
KO
K03125
transcription initiation factor TFIID subunit 1 [EC:
2.3.1.48
2.7.11.1
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
115135812 (taf1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
one01001
]
115135812 (taf1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
one03021
]
115135812 (taf1)
03036 Chromosome and associated proteins [BR:
one03036
]
115135812 (taf1)
Enzymes [BR:
one01000
]
2. Transferases
2.3 Acyltransferases
2.3.1 Transferring groups other than aminoacyl groups
2.3.1.48 histone acetyltransferase
115135812 (taf1)
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
115135812 (taf1)
Protein kinases [BR:
one01001
]
Serine/threonine kinases: Other
TAF1 family
115135812 (taf1)
Transcription machinery [BR:
one03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
115135812 (taf1)
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Histone modification proteins
HATs (histone acetyltransferases)
115135812 (taf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3591
Bromodomain
TBP-binding
zf-CCHC_6
Cac1_C
Motif
Other DBs
NCBI-GeneID:
115135812
NCBI-ProteinID:
XP_029526775
EnsemblRapid:
ENSONEG00000041159
LinkDB
All DBs
Position
LG10:43815220..43872638
Genome browser
AA seq
1947 aa
AA seq
DB search
MSDSDSDEDQDRPFSLTGFLFGNINEDGQLEGDSVLDTESKKHLAGLGSLGLGNLITEIT
ASEEDDLDEDGDTGWVKNDADAVDYSDINEVAEDETKKYRQAVGSLQPTRRTDDEDDYDA
DCEDIDAKLMPPPPPPCLPTPGGKKDDSSPTAASVGDEGDGIILPSIIAPSSLVDKVDFS
SSSDSESETDRPSAGPGSGGSPACLSLPLAGIMQKDAAKALPGVTQLFPEFRPGRVLRFL
RLFGPGKNMPSVWRSARRKRKRKHRDPQPGTPPPEGAEPMEQQGPEKKSGWDYEYAPPPP
PEQCLSDDEITMMAPIESKFSQTSGDGDKVTESRPKVAEWRYGPAQLWYDMMGVPDDGSG
FHYGFKLKEEEDDEQEKRERPEPPPPLQHPKEEGSGDEKDKQALENELFLMVTQLQWEDD
IIWNGEDVKHKGTKTQRASLAGWLPSSMTRNANAYNAQQGIHDVYLHSTGLSRSNSQLVP
PTPPPMPKAPSIGSGSKRDKHHHDHHAAHEEDAPWFSIFPIDNEELVYGRWEDNIIWDDQ
AMDRMLSPPVLTLDPNDENIILEIPDEKESERMSHSPSKENKKESSLKKSRILLGKTGVI
KDEPQQNMSQPEVKDPWNLSNDEFYYPKQQGLRGTFGGNIIQHSIPAVELRQPFFPTHMG
PMKLRGFHRPSLKKYSFGTLSQPGPHAAQPLLKQIKKKAKMREQERQASGGGDMFFMRTA
QDLTGKDGDLILAEYSEEYPPLIMQVGMATKIKNYYKRKPGKDPGAPDCKYGETVYCHTS
PFLGSLHPGQLLPAFENNLFRAPIYLHKMPETDFLVLRTRQGYFIRELVDIFVVGQQCPL
YEVPGPNSKRANTHIRDFLQVFIYRLFWKSKDRPRRIRMEDIKKAFPSHSESSIRKRLKL
CADFKRTGMDSNWWVLKPDFRLPTEEEIRAMVSPEQCCAYYSMLVAEQRLKDAGYGEKSF
FAPEEENEEDFQMKIDDEVRTAPWNTTRAFIAAMKGKCLLEVMGVADPTGCGEGFSYVKV
PNKPTQQKAQDDREPQPAKKTVTGTDADLRRLSLKNAKQLLRKFGVPEEEIKKLSRWEVI
DVVRTMSTEQARSGEGPMSKFARGSRFSVAEHQERYKEECQRIFDLQNKVLDSTEVLSTD
TDSSSAEDSDFEEMGKNIENMLQNKKTSSQLSREKEEQERKELQRMLMGEESDHKGRKGF
SSALSTGSHKDDDTSSVTSLNSSATGRRLKIYRTFRDEDGKEYVRCETVRKPSVIDAYTR
IRTTKDDEFIRKFAVFDEQHREEMRKERRRIQEQLRRLKRNQEKDRFKGPPEKKAKKIKE
RPDLKVKLKCGACGAIGHMRTNKFCPLYYQTNAPPSNPVAMTEEQEEELEKTVIHNDNEE
LIKVEGTKIVLGKQLIESADEVRRKSLVLKFPKQHLPPKKKRRVGTTVHCDYLNRPHKSI
HRRRTDPMVTLSSVLESVINDMRDHPNTYPFHTPVNAKVVKDYYKVIPRPMDLQTLRENV
RKRVYPSREEFRENVELIIKNSATYNGAKHPITQVAQTMLDLCDVKLKEKEDRLVRLEKA
INPLLDDDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVQPMDLENVR
KNISKHKYQNRDVFLFDVSLVHTNSVKYNGPDSPYTKTALEIVNVCKQTLAEYDEHLTQL
EKDISTAKEAALDAADLDCLDPMTPGTYTSQGRHRRLGEEESDVDIEGFEEEEYDCKPKT
PAPAEDGEGDLEDEDDEEEMLLPPLRRQLQGHNDDDYDEDEGSSRPAQASVLYQDLLMSD
GEDDASEEEGDNPFSSIHLSESGSDSDREVEVRPLPPPRPHQETARMGLEQDDSMMSYGE
DVPDETHLEDSNVSYGSYEEPEGQTQTQTSSMGNGEGYGMSEEEEEDKEAARRRGPSVLS
QVQLSEDEEDSEEFRSIGGDSDMDSDN
NT seq
5844 nt
NT seq
+upstream
nt +downstream
nt
atgtcggactcagacagtgatgaagaccaagaccgtcccttctctctcactggcttcctc
ttcgggaacatcaatgaagatggtcagctggaaggagacagcgtgctggacactgaatcc
aaaaagcacctggctggcctgggctccctgggactgggcaacctcatcacagagatcact
gctagtgaggaggacgatctggacgaggatggagacacaggctgggtgaagaacgatgcc
gatgcagttgattattctgacatcaacgaggtggctgaagatgagactaagaagtatcgt
caggccgtgggcagcctgcagcctacgaggagaacagatgatgaggatgactatgatgcg
gattgtgaggatattgatgccaagcttatgccccctccacctcctccatgtctccccacg
cctggtggcaagaaagacgactcctctcccacggctgcaagtgttggggatgaaggagac
gggatcatcctgccctccatcatcgctccttcctctctggtagacaaagtggacttcagc
agttcctcagattctgaatcggagacagacaggccatctgcaggccctgggtcagggggt
tctccagcctgcctcagcttgcccctggctggcatcatgcagaaggatgctgccaaagcc
ctgcctggcgtcacacagcttttcccagagttcaggcctggaagggtgctgcggttcctt
cgactgtttggccctgggaagaacatgccgtcggtgtggcggagcgcacggagaaagagg
aagaggaagcaccgcgacccccagccagggacacccccaccagagggcgctgagcccatg
gagcagcagggaccagagaagaagtctggctgggactatgaatacgccccacctccaccc
ccagaacagtgcctgtctgacgacgagatcaccatgatggccccaatagagtccaagttc
tcccagacctctggagacggggacaaggtgacagagtccaggcccaaggtggcagagtgg
cgctacggtccggcccagctttggtacgacatgatgggggtccctgacgatggcagtggc
ttccactacggcttcaaactgaaggaggaggaggacgatgagcaggagaaacgggagagg
ccagaaccaccgccacctttacaacatcccaaagaggagggcagtggtgacgaaaaggac
aaacaggccctggagaatgagctcttcctgatggtcactcagcttcagtgggaggacgac
atcatttggaacggagaggacgtgaaacacaagggcactaagacccagcgagccagtctg
gcagggtggctgccttccagcatgacccgcaacgccaatgcctataacgcacagcagggt
attcatgatgtctatctacactctacaggtctgagtaggagtaactctcagctggtgccc
cccactcctccacccatgcccaaagccccttccatcggctctggctccaagagggacaaa
caccaccacgaccatcatgccgctcatgaagaggatgccccctggttctccatcttcccc
attgacaatgaggagctggtgtacgggcgctgggaggacaacatcatctgggatgaccag
gccatggaccgcatgctctcaccccctgtcctcaccctagaccccaacgatgagaacatc
attttagaaatcccagatgagaaggagtctgagcgtatgtcccactctccgtccaaggag
aacaagaaggagtcatcactaaagaagagtcgcatcctgttggggaagactggggtcata
aaagatgagcctcaacagaacatgtcccagcctgaggtgaaggacccatggaacctgtcc
aatgatgagttctattatcctaagcagcaaggactgaggggcaccttcggtggcaacatc
attcagcactccatccctgcagtggagctgaggcagccgttcttccctactcacatggga
cccatgaagctgcgtgggttccaccggccctctctgaagaagtactcattcgggacgttg
tcccagccaggtccccacgcagcccagcccctactcaaacagatcaagaagaaggccaag
atgcgagagcaggaacgccaggcttccggtggaggtgacatgttcttcatgcggacagct
caggacctgacagggaaagacggagacctgattctggcagagtacagcgaggaataccct
ccgctcatcatgcaagtcggcatggcaaccaagattaagaactattacaagagaaaacca
gggaaggaccctggagctccagactgtaagtacggagagaccgtgtactgccacacctca
cctttcctgggctccttgcaccccgggcagctgctgccggcttttgagaacaaccttttc
cgtgcccccatctacctccacaagatgccagagacagatttcctggtgctgcgtacacgg
cagggctacttcattagagagctggtagacatctttgtggtcggccagcagtgtcccctc
tatgaggtccctggacccaactccaaacgagccaacacccatatcagagacttcttgcag
gtgtttatctatcggttgttctggaagagtaaagatcgtcccaggagaatccgcatggag
gacataaagaaagctttcccctcacattcagaaagcagcatccgcaaacgcctaaaactc
tgtgctgactttaagcgtacagggatggactctaactggtgggtgctgaagcctgacttc
aggctccctactgaggaggagatcagggccatggtgtctccagagcagtgctgtgcctac
tacagcatgctggtggcagagcagagactgaaggatgctggatatggtgaaaagtccttc
tttgccccagaggaagagaatgaggaagacttccagatgaagattgatgatgaggtccgc
acagccccttggaacacgacacgagccttcatcgctgccatgaaggggaagtgtctgctg
gaggtcatgggggtggccgaccccacaggctgtggagagggattctcttacgtcaaagta
cccaacaagcccactcaacaaaaggcccaagacgaccgggaaccacaacccgctaagaag
actgtgacagggacagatgctgatctgagaagactgtcactcaaaaacgccaagcagctg
ctgcgcaagtttggtgtcccagaggaggagataaagaagctgtctcgttgggaggtgatt
gacgtggtgaggaccatgtccacagagcaggcccgctctggtgaggggcccatgagcaag
tttgcccgtgggtcccgcttctctgtagccgaacaccaggagcgctacaaggaggagtgt
cagaggatctttgacctgcagaacaaagtattggattccacagaggtcctgtccacagac
acagacagcagctcagcggaggacagtgactttgaggagatggggaagaacattgagaac
atgctgcagaacaagaagaccagctcccagctgtccagagagaaggaggagcaggagagg
aaggagctgcagaggatgctgatgggagaggagagcgaccacaagggacgcaagggcttc
tccagtgccttgtccacaggctcccataaagatgacgacacgtcctcggtcaccagcctg
aactcgtccgctacgggacggcgcctcaaaatctaccgcaccttcagagacgaagacggc
aaggagtatgtccgctgtgagacggtccgcaaaccctccgtcatagacgcctacaccaga
atcagaaccaccaaggatgatgagttcatacgaaagtttgctgtgtttgacgagcaacac
agagaggagatgaggaaggagcggaggaggatccaggaacagctgaggaggctgaagagg
aaccaggagaaggacaggttcaagggccccccggagaagaaggccaagaagatcaaggag
aggccagacctcaaggtaaaactgaagtgcggagcttgcggtgccatcgggcacatgcga
accaacaagttctgcccgctatactaccagaccaacgccccgccctccaacccggttgcc
atgacagaggaacaggaggaggagctggagaagactgtcattcacaacgacaacgaggaa
ctcatcaaggtggagggaaccaagatcgtcctcggcaagcagcttatcgagagtgctgat
gaggtgcgcaggaagtctctggtgctgaagttccccaaacagcatcttccccccaagaag
aagagacgtgtggggaccactgtacactgtgactacctcaataggccccacaaatccatc
caccgccgacgcactgaccccatggtcaccctgtcctcagtcctggagagcgtcatcaac
gacatgcgggatcacccaaatacataccccttccacacgccggtcaatgccaaggtggtg
aaggactactataaggtcatccctcgtcccatggatctgcagacgctacgggagaatgtg
cgcaagcgtgtgtacccctcccgggaggagttcagagagaacgtggagctcatcatcaag
aacagcgccacatacaatggtgccaaacatccaataacccaggtggcgcagacaatgctg
gacctttgtgatgtgaaactgaaagagaaggaagacaggctggtgagactggagaaagct
atcaaccccctgctggacgatgacgaccaggtagccttctccttcatcctggacaacatc
gtcactcagaagatgatggccgtgcctgattcttggccgttccaccatccagtcaacaag
aagtttgttccagattactacaaagtgatagtccaacccatggacctggagaatgtccgc
aagaacatatccaaacacaagtaccagaaccgggatgtgttcctgtttgacgtcagcctg
gtccacaccaacagtgtcaagtacaacggtccagacagtccttacaccaagacggccctg
gagatagtcaacgtgtgcaagcagaccctggcagagtatgatgagcacctgacccagctg
gagaaggacatctccacagctaaagaggcagctctggatgcagcagacctggattgcctg
gaccccatgactcctggaacctacacatcacagggtcgtcatagaagactaggagaggag
gagtcggacgtggacatcgagggcttcgaggaggaggagtatgactgcaagcccaagaca
ccagctcctgctgaggatggtgagggagacctggaagatgaggatgatgaagaggagatg
ctgttgccgccgctccgcagacaactgcaaggccacaatgatgatgattatgacgaggat
gaaggctccagtcggccagcccaagccagcgtgctgtaccaggacctgctcatgtcagac
ggagaggatgacgccagcgaagaggagggagacaacccgttctcctcgatccacctgtca
gagagtggcagtgactcagacagagaggtggaagtgcgtcccctgccccctcccagaccc
caccaagagacagcccgcatgggcctggagcaggacgacagcatgatgtcatacggggaa
gatgtgccggatgagacccacctggaggacagtaatgtcagttatgggagctatgaggag
ccggagggtcagacccagacccagacctccagcatgggcaatggagagggctatggcatg
agtgaggaagaggaggaagataaagaggcagctcggaggaggggtcccagtgtactttcc
caggtgcagctgagtgaggatgaggaggacagtgaagaattccggtccatcgggggtgac
agtgacatggactcagacaactag
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integrated database retrieval system