Oncorhynchus nerka (sockeye salmon): 115139859
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Entry
115139859 CDS
T07952
Name
(RefSeq) neurogenic locus notch homolog protein 1-like isoform X1
KO
K02599
Notch 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
115139859
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF
hEGF
Ank_2
EGF_CA
EGF_2
Ank
Notch
NOD
NODP
Ank_3
Ank_5
Ank_4
DL-JAG_EGF-like
EGF_3
Motif
Other DBs
NCBI-GeneID:
115139859
NCBI-ProteinID:
XP_029533552
EnsemblRapid:
ENSONEG00000009722
LinkDB
All DBs
Position
LG13:43668567..43715915
Genome browser
AA seq
2525 aa
AA seq
DB search
MHHFFVKLTFLLSLIALTRGLRCSMSTESCLNLGRCEATADGNGECKCRDGYVGNRCQHQ
DPCTYSSCKNGGSCRMVPRGNSVEFTCFCRPGFTDRLCLTPIDNACLSLPCRNGGTCDLV
NLKEYKCRCPPGWSGKQCQQADPCASNPCANGGQCTPFESHYICSCTPFFYGQTCKQDVN
ECAQNPSPCKNGGVCVNEVGTYRCQCPQEYTGKHCDTRYLPCNPSPCHNGATCVQKGDTT
YECSCVPGFSGQNCDTNIDDCPRHECQNGGTCVDGVNTYNCQCKPEFTGQFCTEDVDECQ
LMPNACQNGGTCHNIYGAYQCVCVNGWTGDDCGENIDDCANAACYQGAVCHDRVASFFCE
CPHGRTGLLCHLDDACISNPCQKGSNCDTNPVNGKAICTCPLGYFGAACDQDVDECSLGG
NPCEHGGKCLNTKGSFQCKCQPGFSGARCEHDINECLSNPCQNEATCLDQIGGFHCICMP
GYEGLFCQINTDECANNPCLNNGKCIDKINTFHCQCPTGFAGNLCQIDIDECASTPCKNG
AKCTDGPNKYTCDCTEGYTGQHCETDINECFSAPCHYGTCKDGLASFTCYCRPGYMGRLC
ETNINECLSQPCRNGGICQDRENSYICTCPKGTTGINCEVNLDDCKSKPCDYGTCLDKIN
GYECACEPGYSGTMCNINIDECDLNPCHNGGTCIDGINSFTCLCPEGYHDTTCFYQVNEC
LSNPCIHGHCQDKVNGYNCLCDNGWSGKNCDINNNECESNPCMNGGTCKDMTSGYVCSCR
VGFTGPSCQTNINECASNPCLNQGTCIDDVAGYKCNCLLPYTGENCETLLAPCSTKPCKN
AGVCQESEDYENFSCVCPEGWQGQTCEVDINECVKNPCLNGATCENTKGNYRCGCKAGYA
GRNCETNIDDCKPNPCSNGGFCRDEVDNFVCTCLPGFRGTKCEEDINECDSNPCKNGANC
TDCVNSYTCTCPSGFSGIHCENNTPDCTESSCFNGGTCVDGINTYTCLCPPGFTGSYCQH
DINECDSRPCLNGGTCQDSYGTYKCTCPQGYIGLNCQNLVRWCDSSPCKNGGTCWQTGTT
YSCECQTGWTGLYCDVPSVSCEVAAKQRGVEVVALCRNSGQCLDAGNTHYCHCQAGYTGS
YCEEQVDECTPNPCQNGATCTDFLGGYSCKCVAGYVGTNCSNEINECFSQPCQNGGTCID
LINTYKCSCPRGTQGVHCEINIDDCNPFTDQVTNEPKCFNKGKCVDRVGGYHCICPAGYV
GERCEGDVNECLSNPCDPRGTHNCVQLTNNYRCDCRTGYTGEHCDTVFDGCKGKPCRNGG
TCAVASNTPHGFICKCPPGYTGSTCEYDAHSCGNLHCRNGGTCVSGHKNPKCLCTSSFTG
PECEYPTDNPCNTNLCYNGGTCEYSPEAPYYHCICPTNFNGLLCHILDYSFLGGFGRDIT
PPPEVEVSCEIPQCEETKGNKFCDMLCNNHACGWDGGDCSLNFDDPWKNCTSSLQCWRYF
NDGKCDEQCNNAGCLYDGFDCQNLEGQCNPLYDQYCKDHYADGHCDQGCNNAECEWDGLD
CANNMPEKLAVGRLVIVVHIMPDQLRNNSLGFLRELSRVIHTNVVFQQDAKGQTMIYPYY
GSEQELKKHNTKRSVGWTEIPDTVLSSMKNSMYTIANGSRRRRRELDPMQIKGSIVYLEI
DNRQCVQQSTECFQSATDVAAFLGALASSGNLNVPYIIEAVHSEVDPQLPSELYPIYVVL
AGLALLAFAGVGMVASRKRRREHGQLWLPEGFKTSEPNKKKRREPVGEDSVGLKPLKNSL
DISLMDNNQNEWGEEEPSDAKRFRQFEEQAMLDLDDQTDHRQWTQQHLDAADLRIPSIAP
TPPQGEIENDCMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDASANVINDFIYQGAK
LHSQTDRTGETALHLAARYARSDAAKRLLEASADANIQDNMGKTPLHAAVAADAQGVFQI
LIRNRATDLDARMHDGTTPLILAARLAVEGMVEELINCHADVNAIDDFGKSALHWAAAVN
NVEAAIVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLEHFANREITDHMDRLPRD
IAQERMHHDIVRLMDEYNLVRSAPVHSHGHGGSMGTTLSPPLCSPNGYLGSMKVQGKKAR
KPSAKGIGCKDGKDMKNKKKASQDGKGGSVLDSSAVLSPVDSLESPHGYISDVASPPMMT
SPFQQSPSMSLNHLQGMSDPHMGVNHMGMPNKQELAHMQFDPLPPRLTHLPVSGSNGSGG
MNGQCDWLSRMHASMGQPSQFNPMRVGPVGGQGGLHQGGGQQGMMTSLHNGLPTTSLSQM
MSYQGLQNTRLASQPHLLQQAQQQMQQQMQHQQNLQQQLQQQQQQQSIQLQHQNSNTGTS
GHSISHNFISSELSGSELQQGTGNQGSMPIHTILPQETQIMSQNLPSTQYLTPPSQHSYS
GPMDNTPNHQLQVPDHPFLTPSPGSPDQWSSSSPHSNMSDWSEGISSPPTSSMQSQIGHI
PDQFK
NT seq
7578 nt
NT seq
+upstream
nt +downstream
nt
atgcatcatttctttgtgaaactaactttcctgttgtcgcttattgctctaacacgaggc
ctaagatgctctatgtccaccgagtcgtgtttgaacctggggaggtgtgaggccacggct
gacggaaatggagagtgcaaatgtcgggatggatacgtggggaacaggtgtcagcatcag
gacccctgcacctactcttcatgtaaaaatggcggctcgtgtcgcatggtgccccgtggg
aattcagtggaattcacgtgtttctgccggccaggcttcacggaccgcctatgtctgacg
cccatcgacaacgcctgtctcagtttaccctgccggaacggtggcacttgcgacctggtc
aacctcaaagagtacaagtgcagatgtcctcctggctggtctggtaagcagtgccagcag
gcagacccctgtgcctctaacccctgtgccaacggcgggcagtgcacccccttcgagtcc
cactacatctgctcctgcacccccttcttctacggccagacctgcaagcaggacgtcaat
gagtgtgcccaaaacccctcaccctgcaagaatggaggcgtgtgtgtgaacgaggtgggc
acctaccgctgccagtgtccccaggagtatacgggcaagcactgcgatacccgctaccta
ccgtgcaacccctccccctgccacaacggggccacctgcgtccagaagggagacaccacc
tacgaatgctcctgtgtgccaggcttttctggtcagaactgtgacaccaacattgatgac
tgtccaagacacgagtgtcagaatggaggaacctgtgtggacggagttaacacctataac
tgccaatgcaaacctgaattcacaggccagttctgtacagaggacgttgacgagtgccaa
ctgatgcccaacgcgtgccagaacggtggaacgtgccacaacatctacggtgcctaccag
tgtgtgtgtgtcaacgggtggacgggggatgactgtggagagaatattgacgactgcgcc
aatgcggcctgctatcagggggccgtctgccacgaccgtgtggcgtccttcttttgcgag
tgtccccatggtcgcaccggtctgctgtgtcacctggatgacgcctgtatcagtaacccc
tgtcagaaaggctccaactgtgacaccaaccccgtcaacggcaaggccatctgcacctgt
cccctgggctactttggcgcagcctgtgaccaggatgtggacgagtgctcgctgggtggt
aacccctgtgagcacggagggaagtgcctgaacaccaagggatcgttccagtgtaagtgt
cagcccggcttctctggggctcgctgtgaacacgacatcaacgagtgcctctccaacccc
tgccagaacgaagccacctgcctcgaccagataggaggcttccactgcatctgtatgcca
ggctacgagggactgttctgccagatcaatacggacgagtgcgccaacaacccctgccta
aacaatgggaagtgtatcgacaagatcaacaccttccactgccagtgccccacaggcttt
gctgggaatctctgccagatagatattgacgagtgcgccagcacgccttgcaagaatggc
gccaagtgcacggacggccccaacaagtacacctgtgattgcactgaaggttacacgggg
caacactgtgagactgacatcaatgagtgtttctcagccccctgtcactatggtacctgt
aaagacggcctggcctccttcacctgttactgtcgccctggttacatgggccggttgtgc
gagaccaacattaatgagtgtctgagtcagccctgtcggaacggaggcatctgccaggac
cgcgagaactcctatatctgcacctgccccaagggcaccacaggtataaactgtgaagtc
aacctggacgactgcaagagcaagccatgtgactacgggacatgcctcgacaagatcaac
ggctacgagtgtgcctgtgagcccggctacagtgggaccatgtgcaacatcaacattgat
gagtgtgacctcaacccgtgtcacaatggtggcacctgcatcgatggcatcaacagcttc
acctgtttgtgcccggagggttaccatgacaccacctgcttctaccaggtcaacgagtgc
cttagcaacccctgtatccatggccactgtcaagacaaggtcaacggttacaactgtctg
tgtgacaatggctggagtggcaagaactgtgacatcaacaacaacgagtgcgagtccaac
ccctgcatgaacggaggcacctgcaaggatatgaccagcggatacgtctgctcatgtaga
gtgggcttcactggtccaagttgtcagacgaacatcaacgaatgtgcctccaatccctgt
ctgaaccaagggacctgcatcgatgatgtcgctggctacaagtgcaactgcctactccca
tataccggtgagaactgtgagaccctgctggcaccctgcagcaccaaaccctgcaagaac
gcaggtgtgtgtcaggagtctgaggactacgagaacttctcctgtgtgtgtccagagggc
tggcaaggccagacctgtgaggtggacattaacgagtgtgtgaagaacccctgtctcaat
ggggccacctgcgagaacaccaaaggcaactaccgctgtggctgcaaggccggctacgct
ggccgcaactgcgagaccaacattgacgactgcaagcccaacccctgcagcaatggaggt
ttctgccgggacgaagtggacaactttgtgtgcacctgcctgcctggtttccgtggcact
aagtgtgaggaggacatcaatgagtgcgacagtaacccatgtaagaatggagccaactgt
acagactgtgtcaacagctacacctgcacctgtccctctggcttcagtgggatacactgt
gagaacaacacacctgactgcactgagagctcttgtttcaacggtgggacgtgtgtggac
ggcatcaacacctacacctgcctgtgcccacctggcttcactggcagctactgccaacac
gacatcaacgagtgtgactccagaccctgcctgaacggaggcacctgccaggacagctat
ggcacctacaagtgtacatgtccccagggctacattggactcaactgccagaatctggta
cgctggtgtgactcgtctccctgtaagaacgggggcacctgttggcagactggcaccact
tacagctgtgagtgccagaccggctggacagggctctactgtgatgtgccaagcgtctcc
tgcgaggtggctgccaaacaaagaggtgtggaggtagttgctctgtgtcgtaactcaggc
cagtgtctggacgcggggaacacccactactgccactgccaggcgggttacacaggcagc
tactgtgaggagcaggtggatgagtgcacccccaacccctgtcagaacggagccacctgc
actgacttcctaggagggtactcctgcaagtgcgtggcaggatacgtcgggacgaattgc
tccaacgagatcaatgagtgtttctcccagccgtgccagaacgggggcacctgcattgac
ctgatcaatacctacaaatgctcctgtcccaggggaacccaaggcgttcactgtgagatc
aacatagacgactgcaaccccttcacagaccaagtcaccaacgagcccaagtgcttcaac
aaggggaagtgtgttgacagggtgggaggttaccactgtatctgtcccgccggctacgta
ggggagcgctgtgagggggacgtcaacgagtgcctgtccaacccatgtgacccccgcggg
acacacaactgcgtccagctcaccaacaactaccgctgcgattgccgtactggatacaca
ggagagcattgtgacacggtgtttgacggctgtaagggcaaaccctgtcgtaacggaggg
acatgtgccgtagccagcaacactcctcacggcttcatctgcaagtgtccacctggctac
actggctccacctgtgagtacgatgcccactcctgtggcaatcttcactgtcgtaatggt
ggcacctgcgtctccggacacaagaacccaaagtgtctctgtacctcctcgttcacgggg
ccagagtgtgaataccccacagacaacccttgtaacaccaacctttgctacaacggggga
acctgtgagtacagcccagaggctccgtactaccactgcatctgccccaccaacttcaac
ggcctgctatgtcacatcctggactacagcttcctgggcgggtttggccgtgacatcacc
cccccgccggaggtggaggtgagctgtgagatcccccagtgtgaggaaacgaaggggaac
aagttctgtgatatgttgtgtaacaaccacgcgtgtggctgggacgggggcgactgctcg
ctcaacttcgacgacccgtggaagaactgcacgtcgtccctgcagtgctggcgctacttc
aacgacgggaagtgtgacgagcagtgcaacaacgccgggtgtctctacgacggctttgac
tgtcagaacctggagggccagtgcaatcctctgtacgaccagtactgtaaagaccactat
gcggacggccactgtgaccagggctgcaacaatgcagagtgtgagtgggacggtctggac
tgtgccaacaacatgccagagaagctggcggtgggccgcctggtcatcgtggtccacatc
atgcccgaccagctccggaacaactcacttggcttcctgcgcgagctgagccgcgtgatc
cacaccaatgtggtgttccagcaggacgctaagggacagacgatgatctacccgtactac
ggcagtgagcaggagctgaagaaacacaacacgaagcgctcggtgggctggacagagatc
cccgacaccgttctcagctccatgaagaacagcatgtatactatagccaatggaagcaga
cgcagacgcagggagctggaccccatgcagatcaaaggctccatagtgtacctggagatt
gacaaccgccagtgcgtccagcagtccacggagtgcttccagagtgccactgacgtagca
gccttcctaggggccctggcctccagtgggaacctcaacgttccctacatcatagaggcg
gttcacagtgaggttgacccccagcttccgtcggagctctatcccatctacgtggtccta
gccggactggctctcctggccttcgcaggcgtggggatggtcgcctcacggaagcgtcgt
cgcgagcacggccaattgtggttgccggagggcttcaagaccagtgagcccaacaagaag
aagaggagggagcccgtcggggaggattcggtgggattgaagccactgaaaaattccttg
gacatatcactgatggacaacaaccagaatgaatggggagaagaggagccttcagacgcc
aagcgctttaggcagtttgaggagcaggcgatgctggacctggacgaccagacggaccac
cgccagtggacccagcagcacctggacgcggctgatctccgaatcccctccatcgccccc
acaccacctcagggggagatcgagaacgactgcatggacgtcaacgtacggggaccagat
ggcttcacccccctgatgatcgcctcctgcagtggtggaggtctggaaaccggcaacagc
gaggaggaggaagacgcctctgccaacgtgatcaatgatttcatctaccagggtgccaaa
ctccacagtcagacagaccgcacgggggagaccgccctccatctcgctgcccgctacgcc
cgctccgacgctgccaagcgtctgctggaggccagtgcagatgccaacatccaggacaac
atgggcaagaccccgctacatgctgccgtggctgccgacgctcagggcgtcttccagatt
ttgatcaggaatcgtgccacagacctggatgcccgcatgcacgatggcaccacccctctg
atcctggcagcccgcctggcagtggagggcatggtggaggagctcattaactgccacgct
gacgtcaacgctatcgatgacttcggcaaatctgctctgcactgggcagcagcagtgaac
aacgtggaagcagctatcgtactactgaagaacggcgccaacaaggacatgcagaacaac
aaggaggagaccccgctgttccttgctgccagggaaggaagctacgagacggccaaggtt
ctgctggagcactttgctaaccgcgagataactgatcacatggaccggctgccccgagac
attgcgcaagagaggatgcaccacgacattgtccgtctcatggatgagtacaacctggtc
cgcagtgcacccgtgcacagccatggccatggaggctccatgggcacgaccttgtccccc
cccctctgctcccccaatggctacctgggcagcatgaaggtccagggcaagaaggcccgc
aagcccagcgccaagggcatcggctgcaaggacggcaaggacatgaagaacaagaagaaa
gcctcccaggatgggaagggagggagtgtgctggatagctcagctgttctgtccccggtg
gactccctggagtctccacacggttatatctctgacgtggcgtctcctcccatgatgacg
tcccccttccagcagtccccgtccatgtcgctcaaccacctccaggggatgtccgacccc
cacatgggggtcaaccacatgggcatgcccaacaagcaggagctggcacacatgcagttc
gacccactcccgccccgtctcacccaccttcctgtgtcaggctccaacggctcggggggc
atgaatggccagtgtgattggctctccaggatgcacgccagcatgggccagcccagccag
ttcaatcccatgagggttggtcctgtcggtgggcagggcggtctgcaccaggggggcggg
cagcaaggcatgatgacctctctccacaacgggctccccaccaccagcctgtcccagatg
atgagctaccagggcctgcagaacacccggctggcctcgcagccccaccttctgcagcag
gcccagcagcagatgcagcagcagatgcagcaccaacagaacctgcagcagcagctccag
cagcagcagcagcaacagagcatccagctgcagcaccagaactctaacactggcactagt
ggccattccatcagccacaacttcatcagcagcgagctgagtggctcagagctccagcag
ggcacagggaaccagggctccatgcctatccacaccatcctaccccaggagacccagatc
atgagccagaacctgcccagcacccagtacctcacccctccctcccagcacagctactcc
ggccccatggacaacaccccgaaccaccagctacaggtcccggaccacccctttctaacc
ccctcccccgggtctcccgaccaatggtctagctcctccccgcattctaacatgtccgac
tggtcagagggcatctcgagtccaccaaccagcagcatgcagtctcagatcggacatatc
cctgaccagttcaagtag
DBGET
integrated database retrieval system
