Orcinus orca (killer whale): 101282979
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Entry
101282979 CDS
T05247
Symbol
POLR1A
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1 isoform X1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
oor
Orcinus orca (killer whale)
Pathway
oor03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
101282979 (POLR1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oor03021
]
101282979 (POLR1A)
Enzymes [BR:
oor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
101282979 (POLR1A)
Transcription machinery [BR:
oor03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
101282979 (POLR1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
101282979
NCBI-ProteinID:
XP_004271647
LinkDB
All DBs
Position
13:13887284..13963566
Genome browser
AA seq
1716 aa
AA seq
DB search
MLGSKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSVNGLYDLALGPADS
KEVCSTCVQDFSNCSGHLGHIELPLTVYNPLLFEKLYLLLRGSCLNCHMLTCPRAVIHLL
LCQLRVLEVGALQSVYELERIQYRFLEENADPTAFEIQEELERYTTKILQNNLLGAHGAR
VKNVCESRSKLIAFFWKAHMTAKRCPHCKTGRSVVRKEHNSKLTITYPAMVHRKADQKDT
EPPGIEEAQMGKRGYLTPTSAQEHLTALWNNEGFFLNYLFLGLEDVGMESGFNPSMFFLD
FLVVPPSRYRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQELPREVAAPAA
DEEKDPSIAMDRSFLSLLPGQSLTDKLYNIWIRLQSHVNIVFDSEMDKLMMEKYPGIRQI
LEKKDGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQEL
RQAVINGPSVHPGASMVINEDGSRTALSASNVTQREAVAKQLLTPAMGAPKPQGTKIVCR
HVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQ
SELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFSREQYMELVYRG
LTDRVGRVKLFPPAILKPCPLWTGKQVVSTLLINIIPEDHVPLNLSGKAKIGGKAWVKES
PRPVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTC
LARLFTAYLQLYRGFTLGVEDILVKPKADVRRHRIIEESTHCGPRAVRAALNLPEAASCD
EVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQFPENNLQMMVQS
GAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIK
PPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYG
EDGLDIPKTQFLQPKQFPFLASNCEVIMKSKHLHEVLSRADPQKALRHFKAIKKWQSKHS
NTLLRKGAFLNYSQKIQAAVKALNLEGANQNGRSPETHQMLRMWAELDEQSRRKYQKKAS
PCPDPSLSVWRPDIYFASVSETFEKKVDDYSREWAAQAERSYEKSELSLDRLRTLLQLKW
QRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIK
TPMMRVPVFNTKKALKKVKSLKKQLTRVCLGEVLEKIDVQESFSMGEKQNKFRVYELRFQ
FLPHAYYQQEKCLRPGDILHFMETRFFKILMESIRKKNSKASAFRSVNTRRATQWDLDNE
GESERSRGEQEGDEEEEGHIVDAEAEEGDADASDAKRKEKQEEEVDYESEDEEDGEDGED
LQEEGTVLGEGTPRAQAQEEEGGSGPEEDSLPAAPLAQPWKPTRSREPQDAEAVERRVRA
VRECHPFIEDYQYDTQDGLWCQVMVKLPLIKVNFDMSSLVVSLAQGAVVYATKGITRCLL
NETTNSKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHAMASTYGIEAALRVIEKE
IKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIRSNSSPLQQMTFETSFQFLKQA
TMMGSHDELRSPSACLVVGKVVKGGTGLFELKQPLR
NT seq
5151 nt
NT seq
+upstream
nt +downstream
nt
atgttgggctcaaagaacatgccctggcggcggctgcagggcatttctttcgggatgtat
tcggccgaagagctcaagaaattaagcgttaagtccattacaaaccctcggtacctagat
agcctggggaacccatcggtgaacggcctgtacgatctagctctgggccccgcagactcc
aaagaggtgtgctccacctgcgtgcaggacttcagcaactgctccgggcacctgggccac
atcgagctcccgctcactgtgtacaaccctctcctcttcgagaaactctacctgctgctc
cggggttcctgtttaaactgtcacatgctgacttgcccccgggctgtgattcacctgctg
ctctgccagctgagagttctggaagtcggggccctacaatcagtgtacgagctggagaga
attcagtacaggtttctggaagaaaatgctgatcctactgccttcgaaattcaggaagag
ttagaacgatatacaaccaaaatcctacagaacaacctcctgggagcccacggcgcacgt
gtaaaaaatgtctgtgagagcagaagcaaacttattgctttcttctggaaggcacatatg
actgctaagcgatgtccccactgcaaaaccgggcggtcagttgtccgaaaggagcacaac
agcaaactgacaatcacgtatccggccatggtgcacaggaaagctgaccagaaggacact
gagcccccgggaattgaggaagctcagatgggaaaacgaggatacttgacacccaccagc
gctcaagaacatctcacggctctttggaataatgaaggattctttctgaattaccttttt
ctgggactggaagatgttggcatggagtccggattcaatcccagtatgttctttctggat
ttcttggtggtgccgccctcaaggtatcgccccgtcagccgcctcggggaccagatgttc
accaacggccagacggtgaacctgcaggctgtcatgaaggatgtggttctgatccgaaag
cttctggccttgatggcccaagaacaggagctgccaagagaggtggcagcacccgccgca
gatgaggaaaaagacccttcgatcgctatggaccggtcctttctgagtctacttccaggc
cagtccctcacagacaaactttacaacatttggattcgccttcagagccacgtcaatatt
gtgtttgatagtgagatggacaaattaatgatggagaagtaccctggcattagacagatc
ctggagaagaaggatggtttattccggaagcacatgatgggaaagcgagtagactatgca
gcccgctcagtcatctgcccggacatgtacatcaacaccaatgaaattggaattcccatg
gtgtttgccacaaagctgacctaccctcagccagtcaccccctggaacgttcaggaactg
aggcaggcggtcatcaacggccccagtgtgcacccaggagcctccatggtcatcaacgag
gatggcagccgcacggccctgagtgcctcgaacgtaacccagcgggaggccgtggccaaa
cagctcctgacgccagccatgggggcacctaagccccaggggacaaaaattgtatgccgg
cacgtgaagaatggggacattctcctcctgaaccgacagcccaccctgcacaggccctcc
atccaggcgcatcgcgcccgcatcctgcccgaggagaaggtcctgcggctccactatgcc
aactgcaaggcctacaacgccgactttgatggagacgagatgaacgcccacttccctcag
agtgaactgggccgggccgaggcctacgtcctggcctgcacggatcagcagtaccttgtt
cccaaggatggccagccattggcagggctgatccaagatcacatggtttcgggtgcaaac
atgaccattcgaggctgctttttcagccgggagcagtatatggagctggtgtaccgagga
ctcacagacagagtggggcgtgtgaagctctttcctcctgccatcctgaagccctgtccg
ctgtggacaggaaagcaggttgtgtccacgctgctcatcaacataatcccagaggatcac
gtcccactgaacttgtcaggaaaggcgaagattggcgggaaggcctgggtgaaggagtct
cctcggcccgttcctggctttaaccccgactccatgtgcgagtcccaggtgatcatcagg
gaaggggagctgctctgcggggtgctggacaaggcgcattacgggagctccgcctacggc
ctggtccactgctgctacgagatctacggcggggagaccagcggcaaggttctcacctgc
ctggcccgcctcttcaccgcctacctgcagctctacagaggcttcactttgggcgtggaa
gacattctggtcaagccgaaggcagacgtcaggagacacaggatcattgaagagtccacc
cactgtgggccccgggctgtcagggctgcgttaaaccttccagaagcggcatcgtgtgat
gaggtccgagggaagtggcaggatgcccatctgggcaaagaccagagggattttaacatg
attgatctgaagttcaaggaggaagtgaatcattacagcaatgaaattaacaaggcatgc
atgcctttcggcctgcacagacagttcccagagaacaacttgcagatgatggtgcagtct
ggagccaaaggttcaactgtgaataccatgcagatctcgtgcctgctgggccagatcgaa
ctggaaggccggagacccccgctgatggcatctggcaagtcactgccctgcttcgagccg
tatgagttcacccccagggctggcggcttcgtcactggcagattcctcaccggcatcaag
cctcctgagttcttcttccactgcatggccgggcgagagggtctggtggacacggctgtg
aagaccagccgctccggctacctccaaaggtgcatcatcaagcacctggaggggctggtc
gtccagtacgacctgacagtccgcgacagcgacggcagcgtggtgcagttcctgtatggg
gaggacggcctggacatccccaagacacagttcctgcagcccaagcagttccccttcctc
gccagcaactgtgaggtgataatgaaatcgaagcacctccatgaagttttatccagagca
gatccccagaaagctctccgccacttcaaagccatcaaaaaatggcaaagcaagcattcc
aacaccctgctgagaaaaggcgccttcttgaattattcccagaaaattcaagcggctgtg
aaagccttgaacctcgagggcgcaaaccagaacggccgcagccccgagactcaccagatg
ttgaggatgtgggctgagttagatgagcaaagccggaggaaataccagaagaaggcgtct
ccttgtcctgaccccagtctgtctgtctggcgcccagacatctactttgcatcagtgtca
gaaacatttgaaaagaaggtggatgactacagtcgcgagtgggcagctcaagcagagagg
agttacgagaaatcggagctctctctggacaggttgaggactcttctgcagctgaagtgg
cagcgctcgctgtgtgacccgggagaggccgtgggcctgttggccgcacagagcatcggg
gagccctccacacagatgaccctgaacaccttccactttgccggcagaggcgagatgaat
gtcaccctgggcattcccaggttgagggagattctcatggtggccagcgccaacatcaag
acgcccatgatgcgcgtgcctgtgttcaacaccaagaaggcgctgaagaaagtaaaaagc
ctgaagaagcagctcaccagggtgtgcctcggggaggtgttggagaaaattgatgtccag
gagtccttctctatgggggagaaacagaacaagttccgggtgtacgagctgcggtttcag
ttcctgccacacgcgtactaccagcaggaaaagtgcctgagacccggggacatcctgcat
ttcatggaaacaagattctttaaaattctgatggaatccatcagaaagaagaatagtaaa
gcatcggctttcagaagcgtaaacacgcggagagctacccagtgggatctagacaacgaa
ggcgagtcggagaggagtcggggagagcaggaaggcgacgaggaagaggaggggcacatc
gtggacgccgaagctgaggagggagacgctgatgcctcggacgccaaacgcaaggagaaa
caagaggaggaggtcgactacgagagtgaggacgaggaggatggcgaggacggcgaggac
ctgcaggaggaagggaccgtcctcggggaaggcactccccgggcccaggcgcaggaggag
gaggggggctcaggccccgaggaggactcgctccccgccgccccactggcgcagccgtgg
aagcccacccgcagccgggagccccaggacgccgaggcggtggagcgccgggtgcgggcc
gtgcgcgagtgccacccgttcatcgaggactaccagtacgacacccaggacggcctgtgg
tgccaggtgatggtgaaactccctctcatcaaggtcaactttgacatgagctccctggta
gtgtccctggcccaaggcgccgtcgtctacgcaacgaagggcatcacgaggtgcctcctg
aacgaaaccaccaacagtaagaacgagaaggagctcgtcttaaacacagaaggcatcaac
ctcccggagctgttcaagtacgccgaggtcctagatttgcgtcgcctctattccaatgac
atccatgccatggccagcacgtacggcatcgaggccgcactgcgggtgatcgagaaggaa
atcaaggatgtgttcgccgtgtacggcatcgccgttgacccccgccacctctccctggtc
gctgactacatgtgcttcgagggcgtttacaagccactgaaccgctttgggatccggtcg
aactcctccccgctgcagcagatgacgtttgagaccagcttccagtttctgaagcaggcc
accatgatgggatcccacgatgagctgaggtcgccgtcagcctgcctcgtggttgggaag
gtcgtcaagggcgggacaggcctcttcgagctcaagcagcccctgagatag
DBGET
integrated database retrieval system
