Orcinus orca (killer whale): 101283685
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Entry
101283685 CDS
T05247
Symbol
FDFT1
Name
(RefSeq) squalene synthase isoform X2
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
oor
Orcinus orca (killer whale)
Pathway
oor00100
Steroid biosynthesis
oor01100
Metabolic pathways
Module
oor_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
101283685 (FDFT1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
oor01006
]
101283685 (FDFT1)
Enzymes [BR:
oor01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
101283685 (FDFT1)
Prenyltransferases [BR:
oor01006
]
Terpene biosynthesis
Squalene/phytoene synthase
101283685 (FDFT1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
SCC3_C
Octopine_DH
HAUS4
Motif
Other DBs
NCBI-GeneID:
101283685
NCBI-ProteinID:
XP_004278741
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Position
6:complement(12374966..12418853)
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AA seq
417 aa
AA seq
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MEFVKCLGHPEEFYNLLRFQMGGRRKVMPKMDQDSLSSSLKTCYKYLNQTSRSFAAVIQA
LDGEMRHAVCIFYLVLRALDTLEDDMTISIERKVPLLHNFHSYLYEPDWRFTESKEKDRQ
VLEDFPTISLEFRNLAEKYQTVIVDICRKMGFGMAEFLDKRVMSEREWDKYCHYVAGLVG
IGLSRLFSASELEDPLIGEDTELANSMGLFLQKTNIIRDYLEDQREGREFWPQEAWSKYV
NKLSDFAKPENMDLAVQCLNELIASTLHHIPDVITYLSRLRNQSIFNFCAIPQVMAIATL
AACYNNQQVFKGVVKIRKGQAVTLMMDATNMPAVKAIIHQYMEEIYHRIPNSDPCSTKTR
QIISTIRSQNLPNCQLISRSHYSPIYLSFVMLLAALSWQYLSTLSQVTEDYVQTGER
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atggagttcgtgaagtgcttggggcaccccgaggagttctacaacctgctgcgcttccag
atggggggccggcggaaggtgatgcccaagatggaccaggattcgctcagcagcagcttg
aaaacttgttacaagtacttgaatcagaccagtcgcagtttcgcagctgttatccaggcg
ctggatggggaaatgcgccatgcagtatgcatattttatctggttctccgagcgctggac
actctggaagatgacatgaccatcagtatagaaagaaaggtccccctgttacacaacttc
cactcgtacctttatgagcccgactggcggttcacggagagcaaggagaaggaccgacaa
gtcctggaggactttccaacgatctccctggagtttcgaaatctggctgagaaataccaa
acagtgattgttgacatttgccggaagatgggatttgggatggcagagtttctggataag
cgtgtgatgtctgaacgggagtgggacaagtactgtcactatgttgctgggctggtggga
attggcctttctcgtctgttctcggcctcagagttagaagatcccttaattggtgaagac
acagagcttgccaactctatgggcctgtttctgcagaaaacaaacatcatccgtgattat
ctggaagaccagcgagaaggaagagagttttggcctcaagaggcttggagcaagtatgtg
aacaagctgagtgactttgccaagccagagaacatggacttggccgtgcagtgcctgaat
gagctcatagccagcacgctgcaccacatccctgacgtcatcacttacctttcacgactc
agaaaccagagcatattcaacttctgtgctattccacaggtcatggccattgccactttg
gccgcctgttataataatcagcaggtattcaaaggggtggtgaagatacgaaaagggcaa
gcagtcaccctgatgatggatgccaccaacatgcccgctgtaaaagctataatacaccag
tacatggaagagatttatcacagaatccccaactccgacccatgttctactaaaacaagg
cagatcatctccacgatcaggtcacagaatcttcccaactgtcagctcatctctcggagc
cactactcacccatttacctgtcgtttgtcatgctcctggcggccctgagctggcagtat
ctgagcaccctgtcccaggtcacagaggactatgttcagaccggagaacgctga
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