Ogataea parapolymorpha: HPODL_04045
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Entry
HPODL_04045 CDS
T08137
Name
(RefSeq) DNA mismatch repair protein MSH6
KO
K08737
DNA mismatch repair protein MSH6
Organism
opa
Ogataea parapolymorpha
Pathway
opa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
HPODL_04045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
opa03400
]
HPODL_04045
DNA repair and recombination proteins [BR:
opa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
HPODL_04045
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
AAA_29
Motif
Other DBs
NCBI-GeneID:
25773476
NCBI-ProteinID:
XP_013934301
UniProt:
W1QEV4
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Position
V:495359..498994
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AA seq
1211 aa
AA seq
DB search
MTSSAKDGASNKMAIKGGPKSTSKYKQSSLLAFFNAKPTKHELSKESAAKSPTIITPQNS
SPVRGEEAKEEKPGAVIDDKENKAPQDLAPTIPESPQLFEPRTPSSVNRSSMPNASQSPL
MKSRRTKKISYIEDSDEESDSDISAPRTKRRKMIADDDEDDDFKLESDNASADDDYFVPD
TENLADELNGDDFPVEVDEEDNSLVSSKPAKGSPKSTDAGISMLAFKFESNSPYTAADKS
KVSTKRQVRKQTPQSKFAKENEERYQWLVHIKDADGRSESDPDYDPRTLYIPKSAWSKFT
AFEKQYWEIKSKMWDSIVFFKKGKFFELYEKDADIGHQKFDLKLAGTGRANMRLAGIPEM
SFDYWAKKFIDEGYKVAKVDQKESLLAKEIREKNANTKDDKVIKRELSCVLTCGTLTDEG
MLSDEMSRYCLSLKEVTNNDNSKTFGVCFVDTATGKIQLTQFEDDVDCNKLETLLAQIQP
MEVLIEKSRVSQLVLRMLKFNSQPHATFNFLKPADEFWTSEIAFEQLTRGKYFEANDLDD
LSNYPNILVEYYESNKNVGFSAFGALLWYLKSLKLDTALISMGNIEQYDPYKTSFSDTCM
RLDGVTLQNLEIFSNSFDQSDKGTLFKILNRAVSPFGKRTFKSWVTHPLMSRKTIESRLD
SVEILMNDGDLKYLLESKLGKLPDLERLLARIHSGNLKVKDFARCVTGFECIVSLVKILK
STYPEGTQRLGGELGRILDSFPPELPECVSNWSNAFDRELAVKDGILVPELGVEPEFDES
NQKIKELEKELERILSQYRREFKCQEMCYKDSGKEIYLIEVPSKAISRIPKDWQQMAATS
KCKRYWSTEVKKLVRKLMEARELHKIIGESLQARMYGRFMGDYPIWSSSIKAVAQLDCIL
SLARASESLGMPACRPEFIDSASAQIEFQDLRHPCFIPGGITGSKDFIPNDISLGVDQKD
HIGLLTGANAAGKSTVLRMTCVATIMAQIGCFVPAKSAKLTPVDTIMTRLGANDNIMQGK
STFYVELSETKKILESCTPRSLIILDELGRGGSSSDGFAIAEAVLHHIATHIQSIGFFAT
HYATLGNSFINHPRVKPLRMGILVDENSRNITFLYKLESGRSSGSFGMHVAAMCGVPKNI
VDNAEQAAEKWEHTSKLKKRNVEADSVPLGLQSDVSWILNSKSVRDDTIATYTDQMKLNA
LSSMFHMIESL
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgaccagttcagcgaaagacggagcctcaaacaaaatggcaatcaaaggaggccctaag
agtacttctaagtacaagcagtcgtcgttgcttgcattcttcaacgcgaagcccacaaaa
cacgagctgagcaaagagtcggctgcgaagtctcctaccatcataactccacaaaattcc
tctccagtgcggggcgaagaagccaaggaagagaaacctggagcagtgatagatgacaag
gaaaacaaggccccgcaggacctggcgccaactataccagagtcgccacaattatttgag
cctaggactccaagttctgtaaatcgcagctccatgcccaacgcttcgcaatcgccttta
atgaagtctagacgcactaagaagataagctacatcgaagattctgatgaagaatctgat
tctgatattagtgctcctagaaccaaacggaggaagatgattgctgacgatgatgaagac
gatgatttcaaactggagagcgacaacgcgtctgctgacgatgactattttgttcctgat
acagaaaatcttgcagacgaactaaacggtgatgatttccctgtggaggtggacgaagag
gataacagtcttgttagcagcaagcccgcaaaaggttctccaaaaagtactgatgcagga
attagtatgttggcattcaaatttgagtctaattccccgtatactgcggctgataaaagt
aaggtgtccaccaaaagacaagtcagaaagcaaacaccacagtccaaatttgcaaaagaa
aatgaggaaagataccagtggcttgtgcacatcaaagatgctgatggacgaagcgaatct
gatcctgactatgatcccaggaccctatacattcctaagtctgcttggtctaaatttact
gcatttgagaagcaatactgggagatcaaaagtaagatgtgggactccatagtgttcttt
aaaaagggcaaattcttcgagctttacgaaaaagatgcagacatcggacatcagaaattt
gatcttaagttggccggcacgggacgggcgaacatgagattagctggaatcccggagatg
tcttttgattactgggctaagaagtttattgacgaaggatataaagttgcaaaggttgac
caaaaggaatcgctgcttgctaaagagattagagagaaaaatgcgaatacaaaggatgac
aaagtcatcaaaagagaactgtcttgtgttctaacgtgtggaactttgacagatgaggga
atgctgtctgatgaaatgtcaaggtattgcttatcgttgaaggaagtcaccaataatgac
aacagcaaaacctttggtgtgtgctttgttgataccgccactggaaaaatccaactcaca
caattcgaagatgatgtggactgtaataaactagagacgctacttgcccagattcagcca
atggaggtgctgattgaaaaatcgagagtttcacaattggtgctgcgaatgcttaaattc
aactctcaaccacatgcaacatttaattttttgaagccggcagacgagttttggacctct
gagatcgcttttgagcaacttacaagaggcaaatattttgaggcaaatgatttggacgat
ctatccaattacccaaatatcctggtggagtactacgaatcgaacaaaaatgttggattt
tcggcatttggagctctcttatggtatctcaaatcactcaagctagataccgcgttgatc
tctatgggcaacatagaacaatacgacccatataagaccagcttctccgatacctgtatg
agactggacggtgtgacacttcagaatcttgagatttttagtaactcctttgaccagagt
gacaaaggcactttgttcaaaatactaaatcgtgcagtgtctccgtttggaaagcggact
ttcaaaagctgggtgacacatcctttgatgtccagaaaaaccattgaatcaaggctggat
tctgtggaaatcttgatgaacgatggagacctcaaatatcttcttgaatccaaactgggc
aagcttcctgatctagaaagactgctggctaggattcattccggaaatctgaaggtcaag
gattttgcccgttgcgtgactggtttcgaatgcatcgtgagtttggtcaagatactgaag
tccacttacccagaaggaacccaaaggctaggaggagaacttggcagaattttggattct
tttccgcccgaattgccagagtgtgtttccaattggtcaaatgcatttgatagggaactt
gccgtcaaagatggaatcttggttccagaacttggcgtggagcccgagtttgacgaaagc
aaccaaaagatcaaagagctagagaaagagctggagaggatcttgagccagtacagacgt
gagttcaagtgccaggagatgtgctacaaagatagcggaaaagagatatatttgattgaa
gttccatccaaagccatttcgcgaattcctaaggattggcagcaaatggcagcaacttcc
aaatgtaagagatactggtctacggaagtgaaaaagttggtaagaaagttgatggaggcc
agagaattgcacaaaattataggcgaatctttgcaagctaggatgtacggcaggttcatg
ggtgactaccctatttggtcgtcttccatcaaggctgtggcacagctggattgtatcttg
tctctggcgcgtgcttcagaatcgcttgggatgcccgcctgcagaccagaatttattgac
agcgcatctgcacagatcgagttccaggacctaagacatccatgctttattccaggtggc
attaccggaagcaaagacttcattccaaatgacatttccttgggggtcgaccagaaggac
catattggcctgcttacgggtgccaatgccgccggaaagtccacagtcctgagaatgaca
tgtgtggccaccattatggctcaaattggatgctttgtccctgcgaagtccgccaaattg
accccagtcgatacgataatgacacggctcggcgccaacgacaatatcatgcaaggaaag
tcgactttctacgtggaactatcagaaaccaaaaagattctagaatcatgcactccgcgt
tcacttatcattcttgatgaattgggacgcggaggatcgtccagtgacggatttgccatt
gcagaggcagtcttgcaccacatcgccacccatattcagtcgatcggcttcttcgcgacc
cattatgccaccctgggaaactctttcatcaatcacccgcgtgtcaagcctcttcggatg
ggaatcttagttgacgaaaactcgagaaacatcactttcctttataaactagagtctgga
cgctccagcgggtcctttggtatgcacgttgcagcaatgtgtggcgttcccaaaaatatc
gttgataatgcagagcaggcagctgaaaaatgggagcatacttccaagctcaagaaacgc
aatgtggaggcagactcggttcctctaggcctccagagcgacgtgagctggattctgaac
tccaaatcagtgagggatgacacgattgccacctacacggaccaaatgaagctcaacgcc
ctgtcgagtatgttccatatgatcgagagcttatag
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