Ogataea parapolymorpha: HPODL_04608
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Entry
HPODL_04608 CDS
T08137
Name
(RefSeq) Subunit of cleavage factor I (CFI)
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
opa
Ogataea parapolymorpha
Pathway
opa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
HPODL_04608
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opa03019
]
HPODL_04608
Enzymes [BR:
opa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
HPODL_04608
Messenger RNA biogenesis [BR:
opa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
HPODL_04608
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
ATP_bind_1
AAA_16
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
25774036
NCBI-ProteinID:
XP_013936420
UniProt:
W1QHQ0
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All DBs
Position
II:complement(144250..145662)
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AA seq
470 aa
AA seq
DB search
MATFDPSILQSILNKTKTESSESVNLVEVPPFQEWRFEVAAKDKLKLKLVDGTAEIFGTE
LSPNIEYAFQGSIKLCVFSFSGCKLQFWNCQPLSEYVSEESCVGQYLTLHLGLEKQRVVE
GPRVLVIGGKDSGKTALCRTLASYAEKQDHQPMLVNLNPRDFQFVIPGNLSATAISDLLN
VENVALGESVATGPSFYHQKQPLAKTFGLEKFSDNVKLYRYLIQQLGKSVRRRLDNDLKV
KKSGVIVDTPAFTIKEYDIIEEIVASFNINVLLIVGSERLLVDLKKKMQNPAITLLKLNK
SSGCVDKDDKYERELQQRSIKEYFYGIDRLQLSPYSITVNLKDFIFVRPKETEHVNLSFL
SGDLADDDEVPRETVNFKQLAERVKNPGSDTLSNSILSLVDDSHIDTLKYLNSDDDDENL
IKPFLDSSSLGFCYVQNCNDEKGKLTLLVPSPVQQLPTRTLLLTQFRYHE
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atggctaccttcgacccctccattctgcagtcgattctcaacaaaaccaaaacagagtcg
tccgagagcgttaaccttgtagaagtgccaccgttccaggaatggcggtttgaagttgcc
gccaaagacaagctcaaactgaaacttgtcgacggaacagcagagatctttggaaccgag
ctgtcgcccaacatagagtacgcgttccagggctcgataaaactgtgtgttttctcgttt
tctggctgtaaattgcagttctggaactgccagccgttgtccgagtacgtcagtgaggag
agctgtgttggacagtatctaacattgcatttgggtctggaaaaacagagagtggtggaa
ggcccgcgcgttctcgtcattggaggaaaggactcgggcaaaacggctctttgccgcacg
ttagcgtcgtacgcagaaaaacaggaccatcaaccgatgctggtcaacctgaatcccagg
gactttcagtttgtgattcctggtaatttgagcgccaccgcgatttccgatctcctgaac
gtcgagaacgtcgccttgggcgaaagcgtcgccacaggtccctctttctaccaccagaaa
cagccattggccaagactttcggactggaaaagttttcagataacgttaaactatacagg
tatttaatccagcaattggggaagtcggtgcgcagacgcctcgataacgacctcaaggtg
aaaaaatcaggtgtgatagtcgacacgcctgcattcacaatcaaagagtacgacatcatc
gaggaaattgttgcatcctttaatattaatgtgcttttaatagttggaagcgagagactg
ctggtcgacttgaagaaaaaaatgcaaaacccagcaatcacgctgttgaaactcaacaag
tccagcggatgcgttgacaaggacgacaaatatgagcgagaactgcagcaacggtcgatc
aaagaatatttttacggcatcgacaggctccagctgagtccgtacagcatcaccgtcaac
ttgaaagatttcatctttgtgcgccctaaggagacggaacacgtgaacctctcgtttttg
agcggggatcttgctgatgatgatgaggtgcctcgcgaaactgtcaatttcaagcagctg
gccgaacgagtcaagaaccctggctcagataccttgagtaactccattctgtctttagtg
gatgattcccatatcgacaccttgaaatacctgaattcagacgacgatgacgaaaacctg
atcaagccattcctggatagcagctccttgggattctgctacgttcaaaattgtaacgat
gaaaaagggaagctaacattattagtgccatctcctgtccagcaattgccaactagaacg
ctcttgttgacacagttcagataccatgaatag
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