Ochotona princeps (American pika): 101524813
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Entry
101524813 CDS
T07609
Symbol
POLR1A
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
opi
Ochotona princeps (American pika)
Pathway
opi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
101524813 (POLR1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
opi03021
]
101524813 (POLR1A)
Enzymes [BR:
opi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
101524813 (POLR1A)
Transcription machinery [BR:
opi03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
101524813 (POLR1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_1
Motif
Other DBs
NCBI-GeneID:
101524813
NCBI-ProteinID:
XP_004590862
LinkDB
All DBs
Position
2:complement(70118715..70186648)
Genome browser
AA seq
1632 aa
AA seq
DB search
MFGSKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYVDSLGNPSANGLYDLALGPADS
KEVCTTCVQDFNNCSGHLGHIDLPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVVHLL
LCQLRVLEVGALQAVFELERILNRFLEENADPSAFEIQEELEQYTTEIIQNNLLGSQGAH
VKNVCESRSKLIAYFWKTHMTAKRCPHCKTGRSVVRKEHNSKLTVTYPAIVHKKAGQDTE
SVGIEEAQMGKRGYLTPNSAREHLFAIWTNEGFFLNYLFSGLDGVDTESKFNPTVFFLDF
MVVPPSRYRPVNRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQKLPCEVATPIID
EEKDTSIAMDRSFLTALPGQSLTDKLYNIWIRLQSHVNIVFDSEMDKLMMEKYPGIRQIL
EKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVCRHVKNGDILLLNRQPTLHR
PSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQY
LVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMELVYRGLTDKVGRVKLLPPAIWKP
FPLWTGKQVVSTLLINIIPDDHIPLNLTGKAKIGGKAWVKETPRPVPGFDPNLMCESQVI
IKEGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLG
VEDILVKRKADVRRHEIIRESTQCGPRAVRAALNLPEAASCDEVRGKWQDAHLGKDQRDF
NMIDLKFKEEVNHYSNEINKACMPFGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQ
IELEGRRPPLMASGKSLPCFEPYEVTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDT
AVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFP
FLASNYEVIMKSKHLHEVLARANCKEALRHSRAIKKWQSKHANPLLRTGAFLRYSQKIQA
AVKALNLEGTNQNGRSPATQQMLQMWYELDEPSRRKYQKKAAPCPDPSLSVWRPDIYLGS
VSETFEKKVDDYSQEWAVQAETSYEKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQS
IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVFNTKKAQKKV
KSLKKQLTRVCLGEVLQKLDVQESFCMGEKQNKFRVYELRFQFLPHAYYQQEKCLRPADI
LHFMETRFFKLLMESIKKKNSRASAFRSVNTRRATQRDLDDAEESARNRGEQEGDEDEDG
HIVDAEAEEGDADASDAKRRKKQEEEVDYESEEEEEEKEGEENEDEETQGEGAHEAQEEA
GGNAEGDLGPEDEPPQEPLHSRKPQAAESVERRVQAVREAHSFIEDYQYDTEESLWCQVT
MKLPLMNINFDMSSLVVSLAQSAVIYTTKGITRCLLNETTNNNNEKELVLNTEGINLQEL
FKYAEILDLRRLYTNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYM
CFEGVYKPLNRFGIRSNSSPLQQMTFETSFQFLKQATMMGSHDELRSPSACLVVGKVVKG
GTGLFELKQPLR
NT seq
4899 nt
NT seq
+upstream
nt +downstream
nt
atgtttggctccaagaacatgccctggcggcggctgcagggcatctccttcgggatgtat
tcggctgaggagctcaagaaattaagtgtgaaatccattacgaaccctcgctatgtggac
agcctggggaacccctcagctaatggcctgtatgatttagccctgggccctgcggattcc
aaagaggtgtgcaccacgtgcgtgcaggacttcaacaactgctccggacacttgggccac
attgatctccccctcaccgtgtataaccctctcctcttcgacaaactctacctgttgctc
cggggctcttgtctaaactgccacatgctgacctgtccccgggccgtggttcacctctta
ctctgccagctaagggttctggaagtgggggccctacaagccgtctttgagctcgagcgg
attctgaacaggtttcttgaagaaaatgctgatccttctgcgttcgaaattcaggaagag
ttagaacaatatacaacggaaatcatacagaacaacctgctggggtcccagggcgcccat
gtgaaaaatgtgtgtgaaagcaggagcaaactcattgcttacttctggaagacgcacatg
accgcgaagcgatgtccccattgcaagaccgggcggtcagttgtccgaaaggagcacaac
agcaagttgacagtcacgtatcctgccattgtgcacaagaaagctggccaggacacagag
tctgtgggaatcgaggaagcacaaatgggaaaacgagggtacctgacgccgaacagtgcc
cgagaacatctttttgccatttggacaaatgaaggattctttctaaattaccttttctcc
ggactggatggtgttgacacggagtccaaattcaatcccactgtgttcttcctagatttc
atggtggtgccaccctcgaggtatcgccctgtcaatcgcctgggggaccagatgtttacc
aacggccagactgtgaacttgcaggccgtcatgaaggacgtggttctgatccgaaagctt
ctggccctaatggcccaagaacagaagctgccatgtgaggtggcaacacccatcatagat
gaggagaaagatacttcaattgctatggatcgatcctttctaactgcacttccgggccag
tccctcacagacaaactatacaacatttggatccgccttcagagccacgtcaacattgtg
ttcgatagtgaaatggacaagttaatgatggagaagtatcctggcattagacagattctg
gagaagaaggaaggcctgttccgaaagcacatgatgggaaagcgagttgactacgcggcc
cgttccgtcatctgcccagacatgtacatcaacaccaacgagattggaattcccatggtg
tgccggcacgtgaagaatggggacatcctcctactgaatcggcagcccaccttgcacaga
ccctccatccaggcccaccgtgcccgcatcctgcctgaagaaaaagtcctgcggctccat
tatgccaactgcaaggcctataatgctgactttgatggagatgagatgaatgcccacttc
cctcagagtgagctgggccgggctgaggcctacgtcctggcctgcaccgatcagcagtac
ctcgttcccaaggatggccagcccttggcaggattgatccaggatcacatggtttcgggt
gcaaacatgactatccggggttgctttttcacccgggaacagtatatggagctggtatac
cgagggctcacagacaaagttggccgtgtgaagctcttgcctcctgccatttggaagccc
ttccctctgtggacaggaaagcaggttgtgtcaacactgctcataaatatcatcccagat
gaccacatcccactgaacttaactgggaaggcgaaaatcggtgggaaagcctgggttaag
gaaactcctcggcctgttcccggttttgatcccaacctgatgtgcgagtcccaggtgatc
atcaaggaaggggaactgctctgcggggtgctggacaaggcccactatggcagctccgcc
tacggcctggtccactgctgctacgagatctacgggggcgagaccagcggcagggtcctc
acctgcctggctcggctcttcaccgcctacctgcagctctacagaggcttcaccttgggt
gtcgaagatattttggtgaaacgaaaggccgatgtcaggagacatgagatcatccgagaa
tccacccagtgcgggccacgggctgtcagggctgcgttaaacctgccagaagctgcgtcg
tgtgatgaggtccgagggaaatggcaggatgcccatctgggcaaggaccagagggacttt
aacatgattgatctgaagttcaaggaggaagtgaaccattacagcaatgagattaacaag
gcatgcatgccttttggcctgcacaggcagttcccagagaacaacttgcagatgatggtg
caatcaggagccaagggttcaaccgtgaacacaatgcagatctcgtgtctcttgggccag
attgagctagaaggtcggaggcctccgctgatggcgtcaggcaagtcgctgccctgcttc
gagccttatgaggtcactcccagggcaggtggctttgtcaccggaagattcctcaccggc
atcaagcctcctgaattcttcttccactgcatggccggacgcgagggcctggtcgacact
gctgtgaaaaccagccgctccggttacctccagaggtgcatcatcaagcacctggagggg
cttgttgtccagtatgacctgacggtacgcgacagcgatggcagcgtggtgcagttcctg
tacggagaggacggcctggacatccccaagacgcagttcctgcagcccaagcagtttccc
ttcctggccagcaactatgaggtaataatgaaatcgaagcatctccatgaagttttagcc
agagcaaattgtaaggaagctctgcgtcactcccgagccatcaaaaaatggcaaagcaag
cacgccaacccactgctgagaaccggcgccttcctccgctactcccagaaaatccaggca
gctgtgaaggccctgaacctcgagggcacgaaccagaatggccgtagcccagcgactcag
cagatgctgcagatgtggtatgagttggacgagccaagtcgaaggaagtaccaaaagaag
gcagccccttgtcctgaccccagtctttccgtctggcgcccagacatctacttggggtct
gtgtccgagacatttgaaaagaaggttgatgactacagtcaggagtgggcagttcaagca
gaaacaagttatgagaaatcagagctttctctggacaggttgaggacactgctgcagctg
aagtggcagcgctccctgtgcgatccaggcgaggctgtaggcctgctggctgcccagagc
atcggagagccctccacgcagatgaccctgaacaccttccactttgcaggcagaggcgag
atgaacgtcaccctgggcattccaaggctccgggagattctcatggtggccagtgccaac
atcaagacgcccatgatgagcgtgccagtgttcaacaccaagaaagcccagaagaaagtg
aaaagcctgaagaagcagcttacccgggtgtgcttaggagaggtattgcaaaaacttgat
gttcaggagtccttctgcatgggagaaaagcagaacaaattccgggtgtacgagctgcgg
tttcagttcctgccacatgcatactaccagcaggagaagtgcctgagacccgctgacatc
ctgcacttcatggagacaagattctttaaacttctgatggaatccatcaaaaagaagaac
agcagagcctcagctttcagaagcgtgaacactaggagagcgacacagcgcgatctagat
gatgctgaggaatcagcgaggaaccggggagagcaggaaggggacgaggatgaggacggc
cacatcgtggacgctgaagctgaggagggtgatgctgatgcctcggatgccaaacgcagg
aagaagcaagaggaggaggtggattatgagagtgaggaagaggaggaggagaaggaggga
gaagagaatgaagacgaagagacccagggggaaggcgcccacgaggcacaagaagaggca
ggtggcaatgccgagggggacttgggccccgaggatgaaccgcctcaggagcccctgcac
agccggaagccccaggcagcggagtcggtggagcgccgggtacaggccgtgcgagaggcc
cactcgttcatcgaggactatcagtacgacaccgaggaaagcctgtggtgccaggtgacc
atgaaacttcctctgatgaacatcaactttgacatgagctccctggtcgtgtccttggcc
caaagcgctgtcatctataccaccaagggcatcacacggtgcctcctgaatgagacaacc
aataataacaatgagaaggagctggtgctcaacacggaggggatcaacctgcaggagctg
ttcaaatatgcagagattctggacctgcgccgcctctataccaatgacatccatgccatg
gccaacacatacggcatcgaggctgcactgcgcgtgatcgagaaggagatcaaggacgtg
tttgctgtttatggcatcgcggtggaccctcgccacctctccctggtggctgactacatg
tgcttcgagggcgtctacaagcccctgaaccgcttcgggatccggtccaactcttcgcct
ctgcagcagatgactttcgaaaccagcttccagtttctgaagcaggccaccatgatggga
tcccatgatgagctgaggtccccttcagcctgccttgtggtcgggaaggtcgtcaaaggt
gggacaggcctgttcgagctcaagcagcccctgagatag
DBGET
integrated database retrieval system
