KEGG   Oryza sativa japonica (Japanese rice) (RefSeq): 9270850
Entry
9270850           CDS       T01015                                 
Name
(RefSeq) DNA-directed RNA polymerases II and IV subunit 5A
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
osa  Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03020  RNA polymerase
osa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    9270850
  09124 Replication and repair
   03420 Nucleotide excision repair
    9270850
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    9270850
   03400 DNA repair and recombination proteins [BR:osa03400]
    9270850
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     9270850
  RNA polymerase III system
   RNA polymerase III
     9270850
  RNA polymerase I system
   RNA polymerase I
     9270850
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      9270850
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N Mrr_cat
Other DBs
NCBI-GeneID: 9270850
NCBI-ProteinID: XP_015635810
UniProt: Q7XUF8
LinkDB
Position
4:complement(24352460..24355421)
AA seq 205 aa
MASEEETSRLFRIRRTVMQMLRDRGYLVTELDIDLPRGDFVARFGDPVDRDHLVFSRHKK
DNGADQIYVFFPKDAKPGVKTIRSYVERMKQESVFNGILVVQQALSAFARSAVQEVSQKF
HLEVFQEAELLVNIKDHTLVPEHELLTPEQKKTLLERYTVKETQLPRIQITDPIARYYGM
KRGQVVKIIRASETAGRYVTYRYVV
NT seq 618 nt   +upstreamnt  +downstreamnt
atggcgtcggaggaggagacgagccggcttttccgcatccgccgcacggtgatgcagatg
ctgcgggacaggggctacctcgtgacggagttggacatcgacctcccgaggggcgacttc
gtcgcacgcttcggggatcccgtcgaccgcgaccatctcgtcttcagccgccacaagaag
gacaacggcgccgaccagatctacgtcttcttccccaaggacgcgaagcccggggtgaag
acgatcaggagctacgtggagaggatgaagcaggagagcgtgttcaacggcatcctcgtc
gtgcagcaggcgctcagcgcgttcgcccgcagcgccgtgcaggaggtctcccagaagttc
cacctcgaggtcttccaggaagcggaactgcttgtgaacattaaggatcatacccttgtg
ccagagcacgagctcctgacgcctgagcagaagaagacgctgctggagcggtataccgtg
aaagagactcagctcccccggattcaaattacggacccaatagcaagatattacggcatg
aagcgtgggcaagttgtaaagatcatccgtgctagtgagaccgctggaagatatgtgacg
taccgttatgtggtgtga

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