Oncorhynchus tshawytscha (Chinook salmon): 112219354
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Entry
112219354 CDS
T05605
Symbol
grin1a
Name
(RefSeq) glutamate receptor ionotropic, NMDA 1a isoform X1
KO
K05208
glutamate receptor ionotropic, NMDA 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04020
Calcium signaling pathway
otw04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
112219354 (grin1a)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
112219354 (grin1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
otw04040
]
112219354 (grin1a)
Ion channels [BR:
otw04040
]
Ligand-gated channels
Glutamate (ionotropic)
112219354 (grin1a)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Lig_chan
ANF_receptor
Lig_chan-Glu_bd
SBP_bac_3
Ion_trans_2
Peripla_BP_6
Motif
Other DBs
NCBI-GeneID:
112219354
NCBI-ProteinID:
XP_024236291
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All DBs
Position
LG20:18296758..18331382
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AA seq
968 aa
AA seq
DB search
MRLFLLAVFLSCSCARGGCEPKIVNIGAVLSQKRYEQVFKDAVTQANQIYGRDKFKLTAI
SVTHKPNAIQMALSVCEDLISNQVYAILVSHPPQSNDHLTPTPVSYTAGFYRIPVVGLTT
RMSIYSDKSIHLSFLRTVPPYSHQAHVWFDMMREFRWNHIILIVSDDHEGRAAQKRLETL
LEERETKNKKRNYENLDQLSYDNKRGPKAEKVLQFSQETNLTALLLEAKELEARVIILSA
SEEDAAAVYKAARFLNMTGSGYVWLVGEREMSGKALSEAPDGLIGLQLINGKNESAHIND
AVAVVAQSIQELFEKENITEPPRGCVGNTNIWKTGPLFKRVLMSSKYPEGLTGRVEFNDD
GDRKYAHYSILNYQKSRLIQVGIYNGTQVVMNNQRKIIWPGGETEKPRGFQMSTRLKIVT
IHQEPFVYVKPTEQDGTCKEEKTLNGVADIKKVICTGPNETIPGRPIVPQCCYGFCIDLL
IKLAGTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLGGLADMIVAPLTINNER
AQYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYLLDRF
SPFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFAMII
VASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMY
RHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMR
KDSPWKQNVSLAILSSHENGFMEDLDKTWVRYQECDSRSNAPATLTFENMAGVFMLVAGG
IAAGIFLIFIEIAYKRHKDARRKQMQLAFAAVNVWRKNLQDSKEASGSQAVGASMTPSLP
SSSLETQDDRKSGRAEPPDPKKKASFRSISTSLASSIKRRRSSKDTQYPPTDITGQLNLS
DPSVSTVV
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgcgtctgtttctgctggcggtgttcctctcgtgctcctgtgcgcggggcggctgcgaa
ccgaagatagtgaacatcggagcagtcctgagtcagaagaggtacgagcaagtctttaag
gatgcggtgacccaggcgaatcagatctacgggagagataaattcaagttgaccgccatc
tccgtaacgcacaaaccgaacgctatccagatggctctctccgtctgcgaggacctcatc
tctaaccaggtgtatgccatcctggtgagtcatcctccccagtccaatgaccacctcacc
cccacgcctgtgtcatacaccgcaggcttctaccgcatccctgtggtgggcctcaccacg
cgcatgtccatctactccgacaagagtatccacttgtcctttctgcggactgtccccccg
tactcccaccaggctcacgtgtggttcgacatgatgcgagagtttcgatggaaccacatc
atcctgattgtcagcgatgaccacgaggggcgggccgcgcagaagagactggagacccta
ctggaggagagggaaacaaagaataaaaaaaggaactatgaaaacctcgaccaactgtcc
tatgacaacaagcgaggacctaaggcagagaaagtcctccagttcagccaggagactaac
ttaactgctctgcttctggaggccaaagagctggaggctcgtgtcatcatcctctccgcc
agtgaagaggacgctgctgcagtttacaaggctgcccgtttcctcaacatgacgggctcg
ggttacgtgtggctggtgggagagcgggagatgtcgggtaaagccctgagtgaggcacca
gatggtctcatcggcctccagctcatcaacggcaagaacgagtcggcccacatcaacgac
gcagtggcagtggtggctcagtccatccaggagctgtttgagaaggagaacatcacggag
ccgcccagaggctgtgtgggaaacaccaacatctggaagaccgggcccctcttcaaaagg
gttctgatgtcatcaaagtacccagagggcctcactggacgtgtggagttcaatgacgat
ggcgacaggaagtacgctcactacagcattctcaactaccagaagagtcgactcattcaa
gtcgggatttacaatggaacacaggtggtgatgaataatcagaggaagatcatctggccg
gggggagagacagagaaaccgcggggctttcagatgtccacgagactaaagatagtgacc
atacaccaggagccctttgtgtatgtgaaacccactgagcaggatggaacctgcaaggag
gaaaaaaccttaaatggagtggcagatattaaaaaggtgatctgcactggaccaaatgag
accatcccaggacgtccaattgtacctcaatgttgttatggattctgtatcgatctactt
atcaagttggccggaaccatgaactttacctatgaggtgcacctggtggctgatgggaaa
tttggaacacaggagcgggtgaacaacagcaacaagaaagagtggaatggcatgatggga
gagctcctggggggtctggcagatatgattgttgccccgctgacgataaacaacgaacga
gcccagtacatcgaattctccaaaccttttaagtaccaaggcctaaccatcctcgttaaa
aaggaaatccctcgcagtacactggactcgttcatgcagccgtttcagagcacactgtgg
ctgctggtgggtctttcggtgcatgtggtggcggtgatgctttacctactagaccggttc
agcccgtttgggaggtttaaagtaaacagtgaagaagaagaagaagacgccctcaccttg
tcgtcagccatgtggttctcctggggagtgttgcttaactccggtattggggaaggcgcg
ccgcgcagcttctcagcgagaatcttgggcatggtgtgggccggctttgccatgatcata
gtggcatcgtatactgccaacctggctgccttcctggtgctggaccggcctgaggagcgc
atcaccggcatcaacgacccgaggctgaggaacccatcagacaagttcatctacgccact
gtgaagcagagctctgtggacatctacttccggcggcaggtggagcttagcaccatgtac
cgccacatggagaagcacaactacgagagtgccgctgaggctatccaggccgtgcgcgac
aacaagctgcatgctttcatctgggactctgcggtgctggagtttgaagcctcgcagaag
tgcgacctggtgaccacgggagagctgtttttccgttcgggctttggcataggcatgcgc
aaggacagcccctggaaacagaatgtgtccctggccattctcagttcccatgagaatgga
ttcatggaagatctagataaaacctgggtgagataccaggagtgtgactcacggagcaat
gccccagccacactcacctttgagaacatggcaggagtgttcatgctggtggctggaggc
atagcagcagggatcttcctcatctttattgagatcgcctacaagcgacacaaagacgcc
cgaaggaagcagatgcagctggcctttgcggccgtcaacgtctggaggaagaacctgcag
gacagtaaggaggcctctgggagccaagctgtgggcgcatcgatgactccatcgttaccc
tcttcctctctagagactcaggatgataggaaaagtggtagagcagagccccccgacccc
aaaaagaaagcctcttttaggtccatcagtacctccctggcctccagcatcaagagacgt
aggtcgtccaaagacacgcagtacccacccaccgacatcacgggccagctcaacttgtcc
gacccatctgtcagcacagtggtgtga
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