Oncorhynchus tshawytscha (Chinook salmon): 112220963
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Entry
112220963 CDS
T05605
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112220963
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112220963
Enzymes [BR:
otw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
112220963
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
112220963
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
CbiA
ATP_bind_1
TniB
AAA_16
MMR_HSR1
AAA_22
AAA_18
Motif
Other DBs
NCBI-GeneID:
112220963
NCBI-ProteinID:
XP_024238744
LinkDB
All DBs
Position
LG21:complement(12928681..12933857)
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AA seq
443 aa
AA seq
DB search
MVTEGPEKTGEEGVGAGAGGGGTRFDLEKETELRFEVEAGEKVHLELLTGLAEVFGSELN
RNKKYTFGPGSKIAVFTWQGCSVSLSGKTEVAYISKDTPMLLYLNAHTALEQMRRQAERD
NERGPRVMVVGPTDVGKSTVCRLLLSYAVRLGRRPTLVDLDVGQSGVSVPGTMSALCIER
PADVEEGYSVQAPLVYHFGSTTPGTNIKLYNKLTSCLAEVFSQRCEENRKASVGGCIINT
CGWVKGSGYQALVHCASAFQVDVVLVLDQERLYNELKRDLPHFVRVVLLPKSGGVVERSK
DCRRESRDEKIREYFYGFRSALFFPHAFDVRFSDVRIYKIGAPSIPDSCLPLGMSQDDTQ
LKLVPVTPGRDLTHHVLSVSCADEGEEGAGGVRRGVLESPVCGFIVVTNVDTQAQVMTVL
SPAPRPLPRHTLLIMDIRFIDLK
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atggtgactgagggcccagagaagactggtgaggagggagtgggggctggtgctggtggc
ggggggacgaggtttgacctggagaaggagactgagctgcggttcgaggtggaggccggg
gagaaggtgcatctggagctgctcacaggattggcggaggtctttggctctgagctcaac
cgcaacaagaagtacacatttggaccaggttccaagattgctgtgttcacctggcagggc
tgtagtgtttctctctcggggaagacagaggtggcgtacatatcaaaggacacacccatg
ctgctctacctgaacgcacacactgcactggaacagatgagacgacaggcggagagagac
aatgagaggggaccacgggtaatggtggtggggcctacagatgtggggaagtcgacggtg
tgcaggctgttgctgagctacgctgtcaggctgggcaggaggcccacactggtggacctg
gatgtgggccagagtggggtgtcagtcccgggcacaatgtcagcactgtgtattgagcgt
ccggctgacgtggaggaggggtactccgtacaggcgccgctggtctaccactttggttcc
accactccaggaaccaacatcaaactctacaacaagttgacgtcgtgtctggccgaagtg
ttctcccagcgctgtgaggaaaacaggaaggccagtgtgggcggctgcatcatcaacacc
tgtggctgggtgaagggttctggctaccaggccctggtccactgtgcctcagccttccag
gtggatgtggttctggtgctggaccaggagaggctttacaacgagttgaagcgggaccta
ccgcacttcgtccgagttgtgctgctacccaaatccggaggggtcgtggagcgctctaaa
gactgccggcgtgaatctcgggacgagaagatccgggagtacttctatggttttcgcagt
gccttgttcttccctcacgctttcgacgtgcgcttttctgatgtgcgcatctacaagatc
ggagcgccttccatcccggactcatgcctgccgcttggcatgtcgcaggacgacacccag
ctgaagctagtccctgtgacacccggtcgtgacctcacacaccacgtgctgagcgtaagc
tgtgctgatgagggggaggagggggctggaggggtgcgcaggggtgtgctggagagccca
gtgtgtggcttcattgtggtgactaacgtggacacacaggcacaggtgatgaccgtgctc
tcgcccgcccccagacccctccccagacacacactgctcatcatggacattcgcttcatc
gacctcaaatag
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