Oncorhynchus tshawytscha (Chinook salmon): 112225034
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Entry
112225034 CDS
T05605
Symbol
parp4
Name
(RefSeq) protein mono-ADP-ribosyltransferase PARP4 isoform X1
KO
K10798
poly [ADP-ribose] polymerase 2/3/4 [EC:
2.4.2.30
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03410
Base excision repair
otw04210
Apoptosis
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
112225034 (parp4)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
112225034 (parp4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
otw03032
]
112225034 (parp4)
03036 Chromosome and associated proteins [BR:
otw03036
]
112225034 (parp4)
03400 DNA repair and recombination proteins [BR:
otw03400
]
112225034 (parp4)
Enzymes [BR:
otw01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.2 Pentosyltransferases
2.4.2.30 NAD+ ADP-ribosyltransferase
112225034 (parp4)
DNA replication proteins [BR:
otw03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
112225034 (parp4)
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Centrosome formation proteins
Centriole proteins
112225034 (parp4)
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
112225034 (parp4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VIT
PARP
VWA_3
VIT_2
VWA
BRCT_2
VWA_2
BRCT
PTCB-BRCT
CobT_C
Motif
Other DBs
NCBI-GeneID:
112225034
NCBI-ProteinID:
XP_042162286
LinkDB
All DBs
Position
LG26:27497017..27533557
Genome browser
AA seq
2058 aa
AA seq
DB search
MGSPWRSISMPCASSDPSARPQSNCVLNWSRFSSDLFQDTHESTKVMSTALYTQSVMERA
AMALFDNCFVVLELKNLPYKEKNRLKLAITENGGSISYVINKQCTLVVTSSMSSLSSSRV
RSMKKHQTPVVGVEYVSLCLEKGVLLPVEDYCLPPPPSTSLIPPRPASPLPSQSVLKGTS
QPAEVQTQTVNAVNQAERAGNQESTYLGKFRVYTESDNDLPTYPTNFQVAKYSIFGKANS
STWSVLELQSGSAEGGQQQYRVVRYWREDHGAKSAAVQDKQVFLSMSEEAVEVYQTLRKE
LQVRGLTLRTTLPPEAPDLGSASLQQLLLEEKLSCSSLSQEVGVFVELLWAEALGCLDNV
LRVPITSLSLNDVSRAEGLLLQVQRKLRARQGEGPDTEVASLMEEVYTLLPHKTDMSHLP
LHTKLISSQLDLCQLIRDVLNVSEATLRSPIPSCLGKYRALRCSIERVPPGPEFLYVTEL
LQDRQVQILQVLRVNRGVELQMFREELGNVKPLLHSSSPSSFVGILSRGLLLPRVGVEHH
GIERTDIGNLGGGIYFSDAISTSLKYSKPSVTDGSRLLLVCDVALGRCTDLQKRDSSLTH
SPEGYHSVHGVRHTPKKPSEFDDDEYVVYSPEQVRLQYVVQFRLEEDQLKDFQPTIDTSS
TELPLPVSPSDLLSCCEAEEDVGSCKNPLEEVTAGLLDCSGQPLPLQAVHVRARLMDLLS
QVIIFQTYTNQSTVPIEAKYVFPLDDSAAVCGFEAFINGKHVMGQVKEKQQARKEYKQAI
ERGHGAYLMDQDAPDVFTISVGNLPAGATVLIKVTFVTELVVMEGLINFSLPGSVAPWQQ
SSALNQRTQVTLEKVCVTNLDSQGEFSLDMSIEMPNEIINLHCLTHKVKIKRTDCKAVVR
TCPGETLGPDGFLVCFSLAQIHLPRMWVEKHPDKDSQACMLVFYPDFEPCPTSSAMSGSS
EVILLLDSSESMRGEALQNARRIALQLLNTLDHHSIRVNVISFGSDQKDAFLSANPLVEA
LQPAKKFIMSSSPVGGSTELWRPLRSLSLLPPSQGVRNLLLLSDGHVQNQALTLQLVRQH
AQHSRLFTCGLSPTANRHMLRALAQAGGGAYEFFDTKTKHTWREKVACQVKRIVSPGCSS
VSVKWQQFNPSAPPPVQAPSQLHALFTDCHTLVYGFVPHCTQATLLGDLSGQNIETMVST
TELQKTRGTFLHKLTARAVIRDYEDGSLHTNEAEHEGKKSVMKSFIIELSKEFSILSQFT
SFVAIEERDSEQPDVGFTDVPKLISDEDVDFLPYLSWQQEEYEGDGMDSGSVISQCQTMS
NLLNGGLGHVLCRNICLEGRGMGEEHESMVQLQVDDGSWEGSVNLRSKFLNQRATDEVPL
GRRLNSSCFMGSMVLASPVTFSAATEPLDMTLKSEGAVTDEEMECFDNMDFELRESEHPL
RGSVIMHSEALSSSSSPILHTHSGSQCIPGTPYLTTSMVPMAMELSETFYSRPKIVRRAK
SREGDFRRADRHRKVCDGPAFDPVETQKKSLSVADVPRPPPSVHHLQMKSCVVADALPPP
PPASVLSSPGPPPSRLQSFFATVSDVLPPPPPAPVLCSPCPPPFRPQSFSAGGSGSLPPP
SALVSNEFRAIRYEMGVHDRPEVGAISHTATFPKLRASGNVLLSKPREPYPVELSSMCEA
SKMWTLDNNLSEYKDCALVEIDHWQPSVVPASVPPSGFGFGDGRAGSQSRQPHGSLFGAT
ASACYIPGLYKASSAGGPPLGGSARSMGLSFEAPLTGGHLSSLSPTTHGTYLTQSLGALV
GSSQFGSSLSTLQQHNVLPQAQKPLDMKKKVQKLVGDSERYVSASVRPSLCLSVYDLYWR
HVLLCVALWYPNEVGFDFRMGGLEFRERGLEFRKKILDVVKWTEIFALQHSEGYWECSAS
LGYLLGVDVDYFANVFLKNRGISSLGVRAHADILRLVASLLVLQLMRVRRLDEGKLLLSL
FRLDLDHSPPQPRCERWEAVRRAVDWVCWADREYPCVCSRLEFGWDWESSTRQLLGIDPP
HPLSPLILLGITGGVRAQ
NT seq
6177 nt
NT seq
+upstream
nt +downstream
nt
atgggatctccctggaggagcatctcaatgccctgtgcctcctccgatccctcggcccga
ccccaaagcaactgtgtactcaactggagtagattctcctccgatcttttccaggacacc
cacgagagcaccaaagtgatgtcaaccgccctctacacccagtctgtcatggaaagagca
gctatggctctgtttgacaactgttttgtggttttggagctgaagaatttgccttataag
gagaagaataggctgaagctggcaataacagagaatgggggcagcatttcctatgtgatc
aataagcagtgtactctcgtagtgacgagcagtatgtccagtctgagctccagtcgggtg
cggagcatgaagaagcatcagactccagtagtaggggtggagtatgtgtcactctgcctg
gagaagggagtcctgctgcctgtagaggactactgcctgcccccccctccctctacctct
ctcatcccacccaggcctgcctctcccttgccatctcagtcagtgttgaaggggacgagc
cagccggctgaagttcagacccagacagtgaatgctgtaaatcaagccgagagggcgggg
aatcaggagagtacttacctgggcaaattcagagtgtatactgaaagtgacaatgatcta
ccaacatatccaacaaatttccaagtggccaaatactcaatttttggaaaggctaacagc
agcacatggtcggtgttggagctgcagagtggcagcgcagaggggggacagcagcagtac
cgtgtggtgaggtactggagagaggaccatggtgctaagtcagcagctgtgcaagacaag
caggtgttcctctccatgtcagaggaggctgtggaggtctaccagactctcaggaaggag
ctgcaggtcagaggactcacactgaggaccaccctccctccagaggctccggatctgggc
tctgccagcctgcagcagctgctgctggaggagaagctgagttgcagcagcctatcacag
gaagtgggcgtgttcgtggagctgctctgggcagaggcccttggttgtctggacaatgtc
ctcagggttccaatcaccagcctcagtctcaacgacgtgagcagggctgaggggctgctg
ctacaggtccagaggaagctgagggcgagacagggggaggggccagacactgaggtggct
tctctaatggaggaggtctacaccctcctgccacacaaaactgatatgtcccatctccct
ctccacactaaactcatctcatcgcaactggacctctgccagttgatcagagacgtgctg
aatgtgagcgaggcaacactgagaagccccatcccttcttgtctggggaagtaccgcgcc
ctgaggtgtagcattgaaagagttccccctggtcctgaatttctgtatgtcaccgaactt
ctacaggacagacaggtgcagatcttgcaggtgctgagagtaaacagaggggtagagcta
cagatgtttagggaggagctggggaatgttaagcccctcctccactcctccagccccagc
agctttgtggggatcctgtctcggggtctgttgctgcccagagttggagtggagcatcat
gggattgagagaacagacattgggaacttgggcggtggcatctacttcagtgatgcaatc
agtaccagtttgaagtactctaagcccagtgtgacggacggcagtcggctgctgctggtg
tgtgacgtggcgttggggcgctgtactgacctccagaagagggacagcagcctgactcac
tcccctgagggataccacagtgtacacggggttcgccacacccccaagaaaccctcagag
tttgacgatgatgagtatgtggtgtacagcccggagcaggtgaggctgcaatatgtggta
cagttcagactggaggaggaccagctgaaggacttccagcccaccatagatacttcttct
accgagcttccgcttcctgtctctccgtctgatctcttgtcctgttgtgaggctgaggag
gatgttgggagctgtaagaaccctctagaggaggtgactgcaggcctgttggactgctct
ggacaaccactccccctacaggccgttcatgtcagggccaggctgatggatctgctctcc
caggtcatcatcttccagacatacaccaatcagagcaccgtccccatcgaagccaagtac
gtcttcccattggatgattctgctgctgtgtgtggttttgaggccttcatcaatgggaaa
catgtaatgggacaggtgaaggagaagcagcaggcgcgtaaagagtataaacaggccata
gagagaggccatggagcttacctaatggaccaggatgcacctgatgttttcaccatcagc
gttgggaacctgcctgccggtgccaccgtccttatcaaagttacctttgtcaccgagctg
gtcgtcatggagggcttgatcaacttctcattgcccggtagtgtggcgccatggcaacag
agctcagcgctcaaccagaggactcaggtgactttggaaaaggtatgtgtgaccaacctg
gattcccaaggggagttcagtctggatatgtccattgagatgcccaacgagatcatcaac
ctgcactgtctcacacacaaagtcaagatcaagaggaccgactgtaaggcggtggtgagg
acatgtccaggtgagactctgggtccagatgggttcctggtctgcttcagtctggctcag
atccacctacccaggatgtgggtggagaaacacccagataaagacagccaggcctgtatg
ctggtattttacccagactttgagccctgccccacctccagcgccatgtccggctccagt
gaggtgatcctgctgttggactcgtctgagtccatgagaggagaagctctccagaacgcc
aggagaatcgccctgcagcttctgaataccctggaccaccacagcattcgagtcaatgtc
atctcctttggctcagaccagaaggatgcttttctctctgccaaccctctagtcgaggcc
ctccaaccagccaagaagttcatcatgtcctcctcacctgttgggggcagcactgagctg
tggaggcccctgcgcagcctgagtctgttgcctccgtcgcagggcgtaaggaacctgctg
ctgctatcagacggtcacgtccagaaccaagccctgaccctgcagctggtcagacagcat
gcccagcacagccgcctcttcacctgcggcctcagcccaacagctaatcggcacatgttg
cgggccctggcccaggcagggggaggggcctatgagttctttgacacaaagacaaagcac
acctggcgagagaaggtggcgtgccaggtgaagcgcatcgtgtctccaggctgcagctct
gtgtctgtgaagtggcagcagtttaacccctcagctcccccccctgttcaggcgccctct
cagctccacgcactcttcactgactgccacaccctggtctacggcttcgtgccacactgt
acacaggccactcttcttggagacctgagtggtcagaacattgagacaatggtgtccacc
actgagctacagaaaaccaggggcacgttccttcataagctcacagcgagggccgttatc
agagactatgaggatggcagtcttcacaccaacgaggctgaacatgaggggaagaaatca
gtgatgaagtccttcatcattgagctgagcaaagagttctccatcctgtctcagttcacc
agctttgttgccatcgaggagagggactcagagcagcctgacgtgggcttcacagatgtt
cccaaactgatatcagacgaggacgtcgacttcttaccttaccttagctggcagcaggag
gaatatgagggagatgggatggactcgggatcagtcatcagtcaatgtcaaacaatgtca
aacttgctgaatggtgggcttgggcatgttttatgcagaaatatctgtctagaggggagg
gggatgggggaggagcatgaatcgatggttcaactccaggtggatgacggatcatgggaa
ggatctgtgaacttacgttcaaaatttctcaatcagagggctacggatgaggtgcctctt
ggtaggagacttaattcctcttgcttcatgggctctatggttcttgccagcccagtgacc
ttttccgctgctaccgaacctctagatatgactttgaagagtgaaggagctgtgacggat
gaagagatggagtgctttgataacatggactttgaattacgggaatctgaacaccccctt
cgtggctcagtaatcatgcatagtgaggctctgtcctcttcttcctctccaattctccac
acgcattcaggcagccaatgcataccaggcaccccataccttactaccagtatggtgcct
atggctatggagctgtctgagaccttctactctcgcccaaagatagtgaggcgtgcgaag
agtagagagggagactttagacgggcggacagacacaggaaggtttgtgacggtccggca
tttgaccctgtagagacacagaagaagtctctctctgttgctgatgtgcctcgtcctcct
ccctctgttcatcatcttcagatgaagtcttgcgttgttgctgatgctcttcctcctcca
ccccctgcttctgtcctcagttctcctggtcctcctccatctcgactgcagtctttcttt
gccacagtttcagatgttcttcctcctccaccccctgctcctgtcctctgttctccttgt
cctcctccatttcgacctcagtctttctctgccggaggttcaggttctcttcctcctccc
tctgctcttgtctccaatgagtttcgagcgattagatacgagatgggagttcatgacaga
cctgaagttggggctatctcccatactgcaaccttcccgaaactgcgagccagtgggaac
gtgctactttccaaaccccgagagccctatcctgtggaactgtcgtcaatgtgtgaggct
agcaaaatgtggaccttggataataacttatccgagtataaggattgtgcactagtggaa
atagaccactggcaaccttctgttgtccctgcctctgtgcccccatcagggtttggtttc
ggggacggaagggcaggttctcaaagcagacaacctcacggctctttgtttggggccaca
gccagtgcatgttacattccaggtttatataaggcttcttcagcaggcggaccacctctt
ggaggctcagccagatcaatggggttaagttttgaggcaccacttactggcggacacctc
agctccctttcacctaccactcatggcacctatctgacccaatctttaggggccttagtt
ggatcctctcagtttggtagctctctcagtacactacaacaacataatgtactaccacaa
gcacaaaaacctctggatatgaaaaagaaagtacaaaaacttgtcggagacagtgaaagg
tatgtgtcagcgtccgttcgtccgtcactttgtctgtctgtgtatgacctctattggaga
catgtattgttatgtgtagcactgtggtatcctaatgaggtaggttttgatttcaggatg
ggaggtcttgaattcagggagagaggtcttgaattcaggaagaaaattcttgatgtagta
aaatggacagagatttttgccctccagcactcggaaggttactgggagtgctctgccagc
ctgggctacctcctcggtgtggatgtggactactttgcaaatgtcttcctgaagaataga
ggcatcagctctctaggtgtgagggcccatgctgacatccttaggctggtggccagtctg
ctggtgctgcagctgatgagggtgaggaggctagatgaggggaagctgctgctcagcctg
ttccgtctggacctggaccactctcctcctcagcccaggtgtgagcgctgggaggcagtg
aggagggcggtggactgggtgtgttgggcagacagggagtacccgtgtgtgtgcagcagg
ctggagtttggctgggactgggagtcgtccacacggcagctcctgggcatcgaccccccg
caccccctctctcccctcatcctcctcgggatcacagggggagtgagggcccaatga
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integrated database retrieval system
