Oncorhynchus tshawytscha (Chinook salmon): 112226078
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Entry
112226078 CDS
T05605
Name
(RefSeq) intercellular adhesion molecule 1
KO
K06527
vascular cell adhesion molecule 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
112226078
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
otw04090
]
112226078
04091 Lectins [BR:
otw04091
]
112226078
CD molecules [BR:
otw04090
]
Proteins
112226078
Lectins [BR:
otw04091
]
I-type lectins (Siglecs)
112226078
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
Ig_2
ig
ICAM_N
C2-set_2
V-set
C1-set
Baculo_11_kDa
Protocadherin
Motif
Other DBs
NCBI-GeneID:
112226078
NCBI-ProteinID:
XP_024246068
LinkDB
All DBs
Position
LG27:complement(12296151..12302604)
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AA seq
693 aa
AA seq
DB search
MCEIIFSRIFLGFPVLLWMAGGLAHASCPLELNPPRLVVRYGDSVSVNCSTSSTDHEGMG
WEATFGGTGLEPDVIVVTWTVKNLTDWTIQPKCYITSKDGKQCLETFPVILYKTPDRVSI
SVLNHSGPMVEGTQYQLQCDIQNIAPLQNLVVKWYKGNKPLDNVIYSNISKRPEDVSATL
MISPNRNDDGAQYRCRAELDLGPEGPQPHPTVTSEPLSITVHYAPEFLPGNDTVEVSAGS
DVSLDCSAEGNPPPELRWTNNTAEGNANETTVGHLRTLNISRVTANATYNCTVTNRLGSI
TKQIHVLVDVPPQQHPTMFSTAPSTPGTMTTLPGTAKPKVVTFPLELNPPRVVVRYRDSV
SVKCSTSSTDHDGMGWEATFGGTSLEQDVNVVTWTVENLTDWTIEPKCYINLNDGEQPSI
VLPVILYKTPDRVSISVLNHSGPMVEGTQYQLQCDIQNITPLQNLVVKWYKGNEPLDNVT
YSNISKRPEDVSATLMISPSKDDNGTQYRCRAELDLGPEGPQPHPTVTSEPLSITVHYKP
CINASRLPVRIPVFRGYPEELVCEAEGYPQPRIKWVYDPAKHVSEAGGNLTVFEAGLYNC
TATNDVATSFIVVEMVLNEDYLRLIAGFVAFMVMVILVILVVIYFIYYKNTKMGRYSLKK
AKLSSTPNGNVAQNGGRDTLLPMTELSQPNIYF
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgaaataatatttagtcggatttttcttgggtttcccgtacttctctggatggca
ggtgggctggcacatgcctcctgtcctcttgagctcaaccctcccagattggtggtgaga
tatggagactcagtctcagtcaactgcagcacatcatccacagaccacgaggggatgggc
tgggaggccacattcggaggtacaggtttagaaccagatgtcattgttgtcacctggact
gtgaagaatttgacagactggacaatacaacctaaatgctacatcacatcaaaagatgga
aagcagtgtttggaaacgttccctgtcattttatacaagactccagacagagtctccatc
tctgttctgaaccactctggtcccatggtggaggggacacagtaccagctgcagtgtgac
attcagaacatcgctcctctacagaacctggttgtgaagtggtacaaagggaataaaccc
ttagataatgtaatttacagtaacatcagtaaaagaccagaggatgtgtcagctactctg
atgatcagccccaatagaaatgatgatggagctcagtatagatgtagagcagaactggac
ctgggaccagagggaccacaaccccatcctacagtgacatcagaacctctcagcattact
gtgcactacgctcctgagttccttccaggaaatgacacagtggaggtgagtgcaggcagt
gatgtgtctctggactgcagtgctgaggggaaccctcctcctgagctgaggtggaccaac
aacactgcagagggaaatgccaatgagaccactgtggggcacctgcgtactctcaatatc
tccagagtaacagctaatgcaacttacaactgcacagtcacaaatagactgggctccatc
accaagcagatacatgtcttagtagatgtacctccacaacaacacccaacgatgttctcc
acagcaccctcaactccaggaactatgaccacccttccaggaacagccaagccaaaagta
gttacctttcctcttgagctcaaccctcccagagtggtggtgagatatagagactcagtc
tcagtaaaatgcagcacatcatctacagaccatgatgggatgggctgggaggccacattc
ggaggtacaagtttagaacaagatgtcaacgttgtcacctggactgtggaaaaccttact
gattggacaatagaacccaaatgctacatcaatctcaatgatggtgaacaaccctcaata
gtacttccagtcattctctacaagactccagacagagtctccatctctgttctgaaccac
tctggtcccatggtggaggggacacagtaccagctgcagtgtgacattcagaacatcact
cctctacagaacctggttgtgaagtggtacaaagggaatgaacccttagataatgtaact
tacagtaacatcagtaaaagaccagaggatgtgtcagctactctgatgatcagccccagt
aaagatgataatggaactcagtatagatgtagagcagaactggacctgggaccagaggga
ccacaaccccatcctacagtgacatcagaacctctcagcattactgtgcactataagcca
tgcatcaatgcatctcgactgccagtgaggatacctgtgttcaggggctatcctgaggag
ttagtgtgtgaggctgagggttacccacagcccaggataaagtgggtctatgacccagcg
aagcatgtcagtgaggcgggaggcaacctgactgtctttgaggcagggctctacaactgc
accgccaccaacgacgtggcgacgagcttcattgtggtagagatggttttaaatgaggac
tacctgcgcctcatagcgggcttcgtggccttcatggtcatggtcatcttggtcatcttg
gtcgtcatctacttcatctactacaagaacaccaagatgggccgctacagcctgaagaag
gccaagctcagcagtacgcccaacggcaacgtggcgcagaacggcggccgggacactctg
ctcccgatgactgaactgtctcagccaaacatctacttctag
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