Oncorhynchus tshawytscha (Chinook salmon): 112234731
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Entry
112234731 CDS
T05605
Symbol
brip1
Name
(RefSeq) Fanconi anemia group J protein isoform X1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03440
Homologous recombination
otw03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
112234731 (brip1)
03460 Fanconi anemia pathway
112234731 (brip1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
otw03400
]
112234731 (brip1)
Enzymes [BR:
otw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
112234731 (brip1)
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
112234731 (brip1)
FA (Fanconi anemia) pathway
Downstream FA components
112234731 (brip1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
Motif
Other DBs
NCBI-GeneID:
112234731
NCBI-ProteinID:
XP_024258773
LinkDB
All DBs
Position
LG13:62548631..62594186
Genome browser
AA seq
1607 aa
AA seq
DB search
MAAPSVEYTIGGVKIQFPCKAYPSQLAMMNSIVRGLNHGQHCLLESPTGSGKSLALLCSA
LAWQQAQYGKLEQDGSSPTEGKKPAVTTPCQCACHSKPASVPDNRPKALATVVVDLTGSP
EVVMAQGSSSPTDPVPPPPEEYKPKSLASRLSDKLQTSLTSEDDDFQPDRKRIRTPAMEQ
KGRKRRCLEPGVVFIDDEPEGERPVPGAQTWTVELSTQAQTIDLPLDRNCCSPMVSCSLC
PCASSKGGQNGAAGKSSKEKDKEGKKKQVPKIFFGTRTHKQITQIAHEMKRTLYSSAPMT
ILSSRDHTCVHPEVVPHSNRNERCKELLEAKNGVSCRFKNGVHKMQDQNTLQWVHGLHQA
WDIEDLVRLGGRLRACSYYAARDLMQEACIVFCPYNYLLDPLIRESMQINLKGQIVVLDE
AHNIEDCARESASYTLNKPQLLSAREELDGMVTHNIRRSNHEPLRAFCCSLLNWMQESCS
VLAEREYEMSCKVWNGKEVLGLFHTMGITADTFAMLQKHLAAVLEKEERVGLVNGREDTV
EVPTISSASSSVLKSLFMVLDFLYRDKSRFAEDYRVALQQSYAWTTAPDVPDAQGFFARP
NRRRHSAKTKTLVHTLSFWCLNPAVAFSDLSDSVHSIVLTSGTLSPMGSFSSELGVKFSI
QLEASHVISKSQVWVGTLGSGPQGRKLCATFQHAETYAFQDEVGALLLRVCQAVGRGVLC
FLPSYKMLDKLRDRWTNTGLWEKLEERKTVITEPRGGGKGDFDELLQVYYDAIRISGEFA
GDRDGALLMAVCRGKVSEGLDFTDDNARAVVTIGIPFPNIKDLQVELKMKYNDQHCKARG
LLSGSRWYEIQAYRALNQALGRCIRHKNDWGALILVDDRFGNNPNKYISGLSKWVRNLVR
HHDTFRGAMQSLVAFSQCQQGAGEIHGAGSQTFNSTTVLSPASQSRPSPSPSSDCLLWAT
VHHTTTSQVPEPHTQLQGFRSWVPPTVSVPPALWPLPTTSTGKSGNIGDQKQTQQHPSTH
PNSDPKAPPPNISTPLTTPRSVHHLFTSTLVSSTHFKTPIFQDPSRHQDHLDDPPRPDSV
EEEEKKIQENVCQDPLIPFPGGMAREGLDGPASTPPSPDQGPVLVLSPVEVPASCEPRQT
TVVVDDPTLLEEEEDQSIFFTPEMFDDEEEVVDTKPLPRTVQGMMTGEGTVLASSLALST
GTAQALSEDLFGPEQSPREDTETVTTTDTKRGGALAPSASRDCVSVGWEQDRQQGSRIGS
GDEAQQTQRQEDQGQGEGQELNQGATQGQSRQTGSRTHRLSRSKQKAPEPSSGHCAEVLV
ARPTQPWKGRVVLSKTQAKNQDQTHVRCSQRGRGRTKAGVPFAPTSSLPVQRQTKDQSLE
VQGRTARVRSASVAGPEETEGEQAVTGWKDQASTKPGTSIRAKTRGPEDSFKSGTSRTAR
GQEDVPKPETNSSKAKGQEVTSIFCQQYSSRGRLKTTCRTEVKRFRGKEAQLPPSWEGLE
EVMSSTPATTTVHLDIVNPKCEGRVCVPGSPGGEPETESSSTGLAKEGPGSQNSLQKGIK
VQDRGGNRASRRRKRTNNHRPCSRGLDCAVCGQQLLPVAEGTFNSHK
NT seq
4824 nt
NT seq
+upstream
nt +downstream
nt
atggctgctccctcagtggagtacaccataggaggggtgaagatacagttcccttgcaaa
gcctacccctcgcagctggccatgatgaactctatagtgcgagggctgaatcatggacag
cactgtctattggagagccctacagggagtggcaagagcctagccctgctctgctctgcc
ctggcctggcaacaggcacaatatggtaagcttgaacaggacggcagcagtcctacagag
ggtaagaagccagctgtcaccaccccctgtcagtgtgcctgtcatagcaaacccgccagt
gtcccagacaacaggcccaaagcactagccactgtggtggtggacctcacaggctcaccg
gaggtagtgatggcacagggatcatcttctcccacagacccagtgccccctccaccagag
gagtacaagcccaagtctctagcctctcgtctgtctgacaagctccagacctccctcacc
tccgaggatgatgacttccagcctgataggaaacgcatccgcacccctgccatggagcag
aagggtcgtaagaggaggtgcttggagccgggagtggtgtttatagatgatgagccagaa
ggagagcggccagtgcctggagcacagacctggactgtggagctgagtacccaggcacag
actatagacctgccacttgatagaaactgctgttcccccatggtgtcctgctctctctgc
ccctgtgcctcatccaaaggcggccagaatggagccgcggggaagtcttcaaaggagaag
gacaaagagggcaagaagaaacaagtccccaagatcttctttggcacgcgcacccacaaa
cagatcactcagatcgcccacgagatgaagcgtacgctctactcttccgcccccatgacc
attctgtccagtagggaccacacctgtgttcacccagaggtggtgcctcattccaaccgc
aacgaacgctgcaaggaactgctggaagccaagaatggcgtgtcgtgccgcttcaaaaac
ggcgtgcacaagatgcaggaccagaacactttgcagtgggtccatggtctccaccaggcc
tgggacatagaggacctggttcggctggggggccggctgagggcctgctcctactacgct
gccagggacctcatgcaggaagcctgtatcgtcttctgtccctacaactacctactggac
cccctcatcagggagagcatgcagatcaacctgaagggtcagattgtggttctggatgag
gcccacaacatagaggactgtgccagggagagtgccagctacaccctgaacaaaccccag
ctgctctctgccagggaggagctggacggcatggtgacccataacatcagacgctccaac
cacgaacccctacgtgccttctgctgctccctgctcaactggatgcaggagagctgcagt
gttctggctgaaagggagtatgagatgtcttgtaaggtgtggaacggcaaggaggttctg
ggactcttccacaccatgggcatcactgctgacacttttgccatgctgcagaaacacctg
gcagcggtgttggagaaggaggagcgagttgggctggtgaacgggagagaggacaccgtg
gaggtccccaccatcagctcagccagctcctctgtcctcaagagtctcttcatggtgctg
gacttcctctacagggacaagagcaggtttgcagaggactaccgcgtggcgctgcagcag
tcctacgcctggaccactgctccagacgtaccagatgctcagggcttcttcgccaggccc
aaccgccgacgccacagtgccaagaccaagaccctcgtacacacactcagcttctggtgc
ctcaaccctgctgtggcgttctcagacctttcggacagtgttcacagcatcgtgttgacc
tcaggcacattgtctcctatgggatccttctcctcagaactgggggtcaagttctctatc
cagctagaggccagccacgtcatcagcaagtcacaggtgtgggtgggtacgctgggctct
ggcccccaggggaggaagctgtgtgccaccttccagcatgctgagacctatgccttccag
gatgaggtgggagccctgctgctcagggtctgccaggccgttggaaggggagtgctctgc
tttttgccctcctacaagatgctggacaagctgcgtgatcgctggaccaacacagggctg
tgggagaagcttgaggagaggaagactgtgatcacagagcccagaggaggagggaaggga
gactttgatgagctgctgcaggtgtactatgatgccatcagaatcagtggagagtttgca
ggggacagagatggagctctgctgatggcagtatgtagagggaaggtgagtgaaggactg
gacttcacagacgacaacgccagagcagtggtcaccatcggcatccccttccccaacatc
aaggacctgcaggtggagctgaagatgaagtataatgaccagcactgtaaagccaggggt
ctgctgtcaggctcccgctggtatgagatccaggcctacagagccctcaaccaggccctg
ggcaggtgtatcagacacaagaatgactggggagccctcattctggtagacgacaggttt
gggaacaaccccaacaaatacatctcaggtctgtccaagtgggtgcgtaacctggtcagg
caccatgacaccttcagaggtgccatgcagtcgctggtggccttctcccagtgccaacag
ggggcaggagagatccatggagcagggagccagaccttcaacagcaccaccgtcctgtct
ccagccagtcaatctaggcccagtcctagccccagctcagactgccttctctgggccacg
gtgcaccacactaccacgtctcaggtcccagagccccacacccagctacaggggttcagg
tcctgggttccccctacggtctctgtcccacctgctctgtggcctctccccaccaccagc
actggaaagagtggaaacataggtgaccagaagcagacacagcaacacccctccactcat
ccgaacagtgatcccaaggccccgcccccgaacatctccactccccttaccaccccacgg
tccgtgcaccacctcttcacctccacccttgtgagctccacccacttcaagactccaatc
ttccaggacccaagcaggcatcaagatcatctggatgacccgccacggcctgactctgtg
gaggaggaggagaagaagatccaggagaatgtgtgtcaggatcccttgatccccttccca
ggagggatggcccgtgaggggctggatggaccggcatctacccctcccagcccggaccag
ggtccggttctagtcctctccccagtggaggtccctgccagttgtgagcccagacagacc
actgtagttgttgacgatcccaccctgctagaggaagaggaagaccagagcatcttcttc
acacctgagatgtttgatgacgaagaggaggtggtggacaccaagcctctccccaggaca
gtgcaggggatgatgacaggggagggaactgtgcttgcgtccagccttgctctctctacc
ggaacagcccaggctctgtctgaggacctgtttggcccagagcagagtcccagggaggac
acagagacagtcactaccactgataccaagaggggaggcgctctcgctccctcagccagt
agagactgtgtcagtgtgggatgggaacaggacaggcagcaggggagtaggatagggagt
ggtgatgaggcccaacagacccagagacaggaggaccaaggtcagggagaaggacaggag
ctgaaccagggggcgacccaaggccagagcaggcagacaggcagcaggacacacagactg
tccaggtccaaacagaaagctccagagccatcctcaggtcactgcgctgaggtccttgtt
gcaagaccgacccagccatggaaagggagagttgttctttccaagactcaggctaagaac
caggaccagacccatgtcaggtgcagtcagaggggcagaggcaggaccaaggcaggggtg
ccctttgcacccacctccagtctcccagttcagcgacagaccaaagaccagagcctagag
gtccagggcaggacagccagagtcagatctgctagtgtcgctggtcctgaagagactgag
ggagagcaggctgtcacaggatggaaggaccaagcctctaccaagcctgggactagtatt
agggccaagaccagggggccagaggactctttcaagtcaggaaccagcaggacggccagg
gggcaggaggatgttcccaagccagagaccaacagcagtaaggccaaggggcaggaggtt
actagtattttctgccaacagtacagcagcagggggagattgaagacaacatgcagaaca
gaggtgaagagattcagggggaaagaggcacagttgcccccctcttgggagggcctggaa
gaagtcatgagcagcacccccgccaccacaacagtgcacttggacattgtcaaccctaaa
tgcgagggtagagtgtgtgtcccaggaagtcctggaggtgaacctgagactgagagtagc
tccactggtctagcaaaggaagggcctggtagtcagaactctttacagaaaggcatcaag
gtgcaggatagagggggcaacagggcctctcggaggaggaagaggactaacaaccacaga
ccctgttccagaggactagactgtgctgtgtgtgggcagcagctactgcctgtggcagag
ggtacatttaattcccacaaataa
DBGET
integrated database retrieval system
