Oncorhynchus tshawytscha (Chinook salmon): 112235020
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Entry
112235020 CDS
T05605
Name
(RefSeq) glutamate receptor ionotropic, NMDA 2C-like isoform X1
KO
K05211
glutamate receptor ionotropic, NMDA 2C
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04020
Calcium signaling pathway
otw04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
112235020
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
112235020
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
otw04040
]
112235020
Ion channels [BR:
otw04040
]
Ligand-gated channels
Glutamate (ionotropic)
112235020
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
SBP_bac_3
ANF_receptor
NMDAR2_C
Motif
Other DBs
NCBI-GeneID:
112235020
NCBI-ProteinID:
XP_042163291
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All DBs
Position
LG27:complement(16698564..16795141)
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AA seq
1437 aa
AA seq
DB search
MGVRLGHLSDSPWWWPLLLLLLLCTAPWCQGRPFAMPLPAVNVAVVFSGSAYQQEIKGRL
SRENFMDLPLEVNPITVLVNNTNPRALLTRICDTLAANRVHGVVFEDNIGSEAVAQILDF
IALQTAVPIVGISGGSAMVLPHKGDGSTFLQLGFSIEQQINGMFKVMEEYNWDSFVVITS
LYPGYEVYVDYVKTFTDTSYFMWELQDVLTFDMSADGMNDIRARRLLQQIDAQVLLVYCS
HEEAQYLFRMAGEAGLLGPGYIWILPSLAVGNPDMPPPNSFPVGLISIITDRWRMSLRKR
VRDGVAIVVKGVQSFHKQRGFIPEGHNDCHSPVRASSNDTLFRHMLNVTWEHNDFSFNPE
GYLINPAMVIITLDRERQWDKVGNYEMGILQMRYPVWPRYGTYLEPVSDNRHLTVATLEE
RPFVIVEAVDPMTGTCVSNTVPCRRQSNKTETIVGHTEPYTKLCCKGFCIDILKKLSRTT
KFSYDLYLVTNGKHGKLVRGSWNGMIGEVVYKRADMAIGSLTINEERSEIIDFSVPFVET
GISVMVARSNGTVSPSAFLEPYSPAVWVMMFVMCLTVVAVTVFIFEYCSPVGYNRSLVRA
KGECQLRPPFPLPLPSRISKGRKSQKNPGGPTFTIGKSVWLLWGIVFNNSVPIENPKGTT
SKVMVLVWAFFAVIFLASYTANLAAFMIQEQYTDTVSGLSDKKFQKPQEQYPPFRFGTVP
NGSTERNIRSNYPEMHAHMVKYNQKGVEDALNSLKSGKLDAFIYDAAVLNYMAGKDEGCK
LVTIGSGKVFATTGYGIALQKESRWKRPIDLALLQFLADGDTQKLQTVWLTGICRNEKKE
VMSSKLDIDNMAGVFYMLLVAMGLSLLVFSWEHLLYWKLRHSVRKSERLDFLLAISRGIY
SCFNGVEDSDRNGNLQNPDVTTNYTQANMLKMLQTAKDIVTSTRVENSLDNATKTIENWS
RRGADNVRVGLPPRVATTIDMGHSRLPYISSITDNHSPYPQRALASTFPIHYSDSTTQPL
LDKSRVVTRPTPLRYTLPARGSSHFYERTLPISSLSSPHIAMRDPAPPSTSSHNPHPSSR
LYVESQPRHPTSPFVPYREFQVPDIYVEHHKGPLGRKFSYPPDHMGRKKRSHSYVFSEAQ
DTRGRNDYDEPTSCLAELRANHLLNNHAPSASTMACMGGHYPSGSASCNSCMKPYLEPEM
EDVPLLGKDKVNRRASFLKATWSSDRIRQLGEKPSTSTMPDLFPRVVVANPKPHKLYGSQ
GNNLCYPLAAEPAYLDPAHMRSYPYKQQKLKCSQSTRLPSYREAILQNAAALRRSSSTVV
HRHYSTYLNSYTDLPVYVGPLPQGPGPFYDKDMCHLFPCASHCPNNNALVPRMGDRQVVY
QNNMFGGYEGAVGRSREEPPLPGSGSRDRREVLVARRVNSPYVPKTWGRVSSLESEV
NT seq
4314 nt
NT seq
+upstream
nt +downstream
nt
atgggcgttcgtctaggccacttgagcgactccccatggtggtggccgctgctgctgctg
ttgctgctctgcactgccccctggtgccaaggtcggcctttcgcaatgcccttgccagca
gtcaacgtggcggtggtgttcagtggctcggcctaccagcaggagatcaaggggcgtctc
agcagggagaacttcatggacctgcccttggaggtgaatcccatcacagtgctggtaaac
aacaccaatcctcgggccctgctcacacgcatctgtgacacactggctgccaaccgcgta
catggtgtggtgtttgaagacaacatcggctcggaagccgtggcacagatcctggacttc
attgccctgcagacggccgtgcccattgtgggcatcagcgggggctccgccatggtcctg
ccacacaagggcgacggctccacgttcctccagctgggcttctccattgagcagcagata
aacggcatgttcaaggtgatggaggagtacaactgggacagcttcgtggtcatcaccagc
ctgtacccgggctacgaggtctacgtggactatgtcaagaccttcactgacaccagctac
ttcatgtgggaactgcaggacgtgctgaccttcgacatgtctgccgacggcatgaacgac
atccgggcacggcgcctgctgcagcagatcgacgcccaggtactgctggtatactgctcc
cacgaggaggcccagtacctgttcagaatggccggagaggccggcctgctggggcctggc
tacatctggatcctccctagccttgccgtggggaacccagacatgcccccaccaaacagc
ttccctgtgggcctcatcagcatcatcaccgaccgctggcggatgagcctgaggaagagg
gtgcgggatggggtggccatcgtggtcaaaggggtgcagagcttccacaaacagaggggc
ttcatccccgagggccacaacgactgccacagccctgttagggcatcttctaatgataca
ctgttcaggcacatgttaaacgtaacatgggaacacaacgacttctcgttcaaccctgaa
gggtacctgatcaacccggcaatggtcatcatcaccttagatcgagagagacagtgggat
aaggtggggaactatgagatggggatcctgcagatgagatacccggtgtggcctcgctac
ggcacctatctggagcccgtatcagataacagacacttgactgtggccacactggaggaa
cgtccctttgtcatagtggaggctgtcgaccccatgactgggacctgtgtcagcaacact
gtgccctgccgccgccagtccaacaagacagagactattgtaggtcatactgagccctac
accaaactgtgctgtaagggtttctgcatagacatcctgaagaagctgtcccgcaccacc
aaattctcatacgacctctacctggtcaccaacgggaagcacggcaagctggtcagaggc
agttggaacggcatgatcggagaggtggtatataagcgggcggacatggccattggctcg
ctgaccataaacgaagagcgctcagaaattatcgacttctccgtgccgtttgtggagacg
gggatcagtgtgatggtcgccaggagcaatgggaccgtctcaccctctgcctttcttgag
ccctacagtccggcggtgtgggtgatgatgtttgtgatgtgcttaacggtggtagctgtc
acagtgtttatctttgagtactgcagccctgtggggtacaaccggagtctggtgagagcc
aagggtgagtgtcagctccgaccacctttccctctacctctaccctcccgtatcagcaaa
ggtagaaagtcacagaaaaatcccggaggccccaccttcactattgggaagtctgtgtgg
ctgctgtggggcatcgtcttcaacaactctgttccaattgagaaccccaagggcaccacc
agcaaggtcatggtcctggtatgggccttcttcgctgtcatcttcctggcctcctacact
gccaacctggcagccttcatgatccaggagcaatacactgacacagtctctggactgagt
gacaaaaagttccagaagccacaggagcagtatccaccgtttcgttttggtacggtccca
aatggaagcacagagaggaacatccggagcaactaccctgagatgcatgcccacatggtc
aaatacaaccagaagggtgtggaggacgccctcaacagcctcaaatcagggaaactggat
gccttcatctatgacgctgctgtgctgaactacatggcaggtaaagacgagggctgtaag
ctggtgaccatcggcagtgggaaggtctttgccaccactggctacggcatcgccttgcag
aaggagtcccgatggaaacgtcctatagacctggccctgctccagttcctagcggatggt
gacacacagaagctgcagacggtgtggctcacagggatctgtcgtaacgagaagaaggag
gtgatgagcagtaaactggacatagataacatggcaggcgtcttctacatgctgctggtg
gccatggggctcagtctcctggtgttcagctgggaacatctgctctactggaagctgaga
cactcagtacgcaagtctgaacgcctcgacttcctgctcgccatcagcaggggaatctac
agctgcttcaacggtgtggaggactctgaccgcaacggaaacctgcagaaccctgacgtc
accaccaactacacccaggccaacatgctgaagatgctgcagacagccaaggacatcgtg
acctcgaccagagtggagaactccctggacaatgccaccaagaccatagagaactggagc
cggcgaggagccgacaatgtgcgggttggcctgccgcctcgggtggcaaccactatagac
atgggccacagccgcctgccctatatctccagcatcacggacaaccactcgccctacccc
cagagggcgctcgcttccaccttccccatccactactcggacagcaccacccagcccctg
ctggacaaatccagggtggtgacgcggcctaccccactacgctacacccttccggcccgt
ggcagcagccacttctacgagagaaccctacccatctccagcctcagcagcccacacatc
gccatgagggaccctgctccccccagcacctccagtcacaacccacaccccagcagcagg
ttgtatgtggagagccagccccggcaccccacctccccatttgtcccctacagagagttc
caggtgcctgacatctatgtggaacaccacaaggggcccctgggacggaagttcagctac
ccccctgaccacatgggcaggaagaagaggtcccacagctacgtgttttctgaggcccaa
gacaccagggggaggaacgactatgatgagccaacctcctgtctggctgagctgagggcc
aaccacctcctgaacaaccatgccccttctgcatcaaccatggcctgcatggggggccac
taccccagtggcagcgccagctgcaactcctgcatgaagccctacctggagcctgaaatg
gaggatgtgcccttgctggggaaggacaaggtcaaccgccgggcctcttttctcaaggcc
acctggagcagtgacaggatccgccagctgggcgagaagccctccacctccactatgcct
gatctgttcccccgcgtagtggtggccaaccccaagccccacaagctgtatggcagccag
gggaacaacctgtgctaccccctggccgctgagcctgcctacctagacccggctcatatg
cgttcctacccctacaagcaacagaagctcaagtgctcccagtccacccggctaccatcc
tacagggaggctatcctgcagaacgcagcagccttgcggcgctcctcctccactgtggtg
cacagacactactccacctacctgaactcctacacagacctgcctgtatacgtggggcca
ctgccccaggggccagggccgttctacgacaaggacatgtgccacttgttcccctgtgca
agccactgccctaacaacaatgcccttgtgccccgtatgggggaccgacaggtagtgtac
cagaacaatatgtttgggggctacgagggcgcggtggggcgatcgcgagaggagcccccc
ctgcccgggtctgggagcagggatcggagggaggtcctggtggccagaagagtcaacagt
ccctatgtgccaaagacctggggcagggtatccagtctggagtctgaggtctga
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