Oncorhynchus tshawytscha (Chinook salmon): 112242111
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Entry
112242111 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: voltage-dependent T-type calcium channel subunit alpha-1H
KO
K04855
voltage-dependent calcium channel T type alpha-1H
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04010
MAPK signaling pathway
otw04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
112242111
04020 Calcium signaling pathway
112242111
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
otw04040
]
112242111
Ion channels [BR:
otw04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
112242111
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
FAM176
Motif
Other DBs
NCBI-GeneID:
112242111
NCBI-ProteinID:
XP_042170946
LinkDB
All DBs
Position
Unknown
AA seq
2138 aa
AA seq
DB search
MRILVTLLLDSLPMLGNVLLLCFFVFFIFHAGCSSPGLLRNRCFMGEDFRTLYNLSLSVY
YQPEESEEDPFICSAIRENGMLRCHDVPPYSEGGAECSLXRASLGGEGGARDGCVNWNQY
YNVCRPGNVNPHKGAVNFDNIAYAWIAIFQVITLEGWVDIMYYVMDAHSFYNFIYFIFLI
IVGSFFMINLCLVVIATQFAETKQRENALMREQRARYMSNDSTLASYSEPGSCYEEMLRY
VSHLYRKLIRRVQRMYTTWHSKRRKKVNPNGGGSGPGVGRRTSGNAPWLRPVHNLLQHHQ
RHHCRHSNGGHTPSGVGCDVVGGTTRPDYCSRGGEELEMRSLPVPCRDPSVTPGLGSSLL
GRLNGGMNYPTILPSFVCSYRSFTPKPIPTHPHKPLPTQPHIPTHPHNPLPTNLHSPLPT
YLHGPQPTQPHIPLPTQPYSPLSRHPHSPQPTQPHIPLPTQPQRPLPTKPSPLSENSPDP
LSKLHQLMGQHSRPRLLYQLAGVVPSPLLLELLGCPLCARALEGMELDLSDLEGSRGEAH
TLHVFPQGGEGRGGRGRRRRKAGLGAGLGIGVKRASNRLLDLGTAFRDRLKRIVDSKYFN
RGIMTSILINTLSMGIEYHQQPVELTDILEISNIVFTCMFLLEMMFKLLAFGLFGYIKNP
YNIFDGIIVIISVWEIVGQADGGLSVLRTFRLLRVLKLVRFLPALRRQLVVLMKTMDNVA
TFCTLLMLFIFTFSILGMHLFGCKFNQQMENGDTIPDRKNFDSLLWAIVTVFQILTQEDW
NVVLYNGMASTSPLAALYFVALMTFGNYVLFNLLVAILVEGFQAEGDANRADSDDDKRSD
DDGEEEKKEKVGELEDTELKMYSLMMTANGHTDRNTLAPPITITRTAATPVSTPKSSLGP
ESVLGEGLVCSDFGDSRRGSAAASIDPSAYDQRSLSSPGQHSPLPPRGQGSASGWGSRRS
SWNSLNRAPSLKRSKTSGERESLLSGEGRGEEEEGALELLQVSSLGPSVTGEYGDCNGRS
LHHMTYDPNKDLSPDDDMEEDNLWFRVRRTLQSHKPRWCREHEDWNLYLFSLRTLSAPSS
RFRVWAKGMISHKMFDHVVLLFIFLNCITIALERPGILPHSTERVFLSVSNYVFTVIFLA
EMTVKIVALGFCWGKQSYLKSSWNVLDGILVFVSLVDILVSLALTGGNRILGILRVLRLL
RTLRPLRVISRAPGLKLVVETLITSLRPIGNIVLICCAFFTVFGILGVQLFKGKFYLCEG
LDTRNITTKSDCLLANYRWTRRKYKIDIDNLGQALMSLFVLSCKDGWVNIMYDGLDAVGV
DQQPVRNHNPWMLLYFISFLLIVSFFSITLNMFVGVVVENFHKCRQDQEEDKPEQRLREE
KRLKILEKSAGVRRRMVPVCKAQQRPYYADYSPVRLTIHTLCTSNYLDLFITIIIGINVV
TMSMEHYNQPQYLEEALKYCNYLFTCIFIIETLLKLVAFGLHRFFKDRWNQLDLAIVLLS
IMGITLEELKMNASLPINPTIIRIMRVLRIARVLKLLKMATGMRALLDTVMQALPQVGNL
GLLFTCCSSGKRICVCVCVCACVCVCVTECNDSNPCEGLSRHATFENFGMAFLTLFRVST
GDNWNGIMKDTLRECRPEERSCLTYLPLMSPVYFVTFVLMAQFVLVNVVVAVLMKHLEES
NKEAKEDAEMDAEIALEMERARRLSSASNESALGGAYVGPRPHSPGQEEEGQCSQEEELL
SPRKMSVSRMHSLPNDSYMFPSVRSASAPYPLQEHSSPLHQASGTQQPPALYRNTAAPYP
LQEHSSPLHQASGSVTSVHSQPCEDQAVLPGLSHPVPPHIAPPRPSPRGLRRQVAVKVDS
VEVQSVASVDRQDPLSTLRLLSPSRPLSPPFLLDPADEEVWHITSSARHWWDRHGSGRCH
SLSPYASPDSPPSLRSRGSALSLLGAGLKAHDPRKGFSVDTQGFLDKPRCPDDQRRHSIE
ICPSPPEDPLLGEVDGEERRPRGQGSEVRGHRKKRMSPPCISIHPPCDPAGRAPSEPQAD
CNPLLRRRTPSYDVADSHTPTHRLTPTHSPVRTLTPTHTPTLTPTHHHTLVQTLPHAVTH
TQTHTHTHTACPMHTLLSVHILYLIHTHTLRPPHTPCP
NT seq
6417 nt
NT seq
+upstream
nt +downstream
nt
atgcgtatcctggtgactctgctcctagactctctccccatgctgggtaacgtcctgctc
ctctgtttcttcgtcttcttcatcttccatgctgggtgcagctccccggggctcctgaga
aacaggtgcttcatgggagaagacttcagaacgctctataacctgtcattgagtgtgtac
taccagccggaggagagcgaggaggaccccttcatctgctcagcaattcgggagaacgga
atgttgcgttgccatgacgtcccgccctacagcgagggaggggccgagtgctcgctgncc
cgcgcctctcttggcggggagggcggggccagagacggctgtgtgaactggaaccagtac
tataacgtctgtcggcccggcaacgtcaaccctcacaaaggagcggtgaactttgacaac
atagcctacgcatggatagccatattccaggtgataaccctggaaggctgggtggacatc
atgtactacgttatggatgctcactccttctacaattttatatattttatattcctcatc
atagtgggctctttcttcatgatcaacctgtgcctggtagtcatagcgacccagtttgcg
gagacgaagcagcgtgagaacgcgttgatgcgcgagcagcgagcgcgttacatgtccaac
gacagtactctggccagctacagcgaaccgggatcctgctacgaagagatgctgagatac
gtttcacacctctaccgtaaactgatccgacgagtacagcgcatgtacacaacctggcac
agtaagcgtcgtaagaaggtgaaccctaacggaggaggaagtggtccgggggtcggccgc
agaacatccggaaacgctccctggctccgccctgtacacaacctgctgcaacatcaccag
cgccaccactgtcggcacagcaacggaggacacaccccatctggcgttggctgcgatgtt
gtcgggggaacaacacgaccagattattgttctcggggtggggaggagctggagatgagg
tcacttcctgtcccttgtcgtgacccctctgtgacccctgggctggggtcgtctctcctg
ggtcgtctgaacggaggaatgaactaccccaccatcctgccctccttcgtctgcagctac
cgcagcttcacccccaagcccatccccacacacccccacaagcccctccccacacagcct
cacattcccacacacccccacaaccccctccccacgaacctccacagccccctccccaca
tacctccacggcccccaacccacacaacctcacatccccctccccacacagccttacagc
cccctctccagacacccccacagcccccaacccacacaaccccacatacccctccccaca
cagccccagaggcccctccccacaaagccctcgcccctctcagaaaacagtccggacccc
ctcagcaagctgcatcaactcatgggacagcacagccgtcctcggctgctgtaccagctg
gctggcgtggtgccctcccctctcctcctggagctgttgggctgcccgctgtgtgcccgc
gccctagagggcatggagctggacctgagcgacctggaggggtctaggggagaggcccac
accctgcacgtcttcccccagggaggagaggggcgcggcgggcgtgggaggcgccggcgg
aaggcagggctgggggcagggctggggatcggggtgaagagggccagtaacaggctgctg
gatctggggacagcattcagagacagactgaaacgcatcgtagacagcaagtacttcaac
agagggatcatgacctccatcctcatcaacactctcagtatggggatagaataccatcaa
cagccggtggagttgactgatatcctggagatcagtaacatcgtgttcacctgcatgttc
ctcctggagatgatgttcaagctgctggccttcggtctcttcggctatatcaagaacccc
tacaacatcttcgacggtatcatcgtcatcatcagtgtttgggagatcgttgggcaggcg
gacggcggtctgtctgtcctgcgtaccttccgtctgctgcgggtcctgaagctggtccgg
ttcctgcccgccctgcgcagacagctggtggttctgatgaagactatggacaacgtagcc
accttctgtacactgctcatgctcttcatcttcaccttcagtatcctaggcatgcacctg
tttgggtgtaaatttaatcagcagatggagaacggagacaccatcccagaccgcaagaac
tttgactcgctactctgggccatcgttactgtgttccagatcctgactcaggaggactgg
aatgtggtcctgtataatggcatggcctccacctctcctctcgctgctctctactttgtg
gctctgatgacgtttgggaactatgtcctcttcaatctgctggtggccatcttggtggag
ggcttccaggctgagggtgatgccaaccgggcggactctgacgatgacaagaggtctgat
gacgatggagaggaggagaagaaggagaaggttggagagctggaagacacagagctgaag
atgtattctctgatgatgacggccaacggtcacacggaccgcaacactctggcccctcca
ataaccatcacgcgcacagcggcgacacccgtgtcgacgcccaagagctcattgggcccc
gagtccgttctgggagaggggctcgtgtgttcagacttcggggactctcgtcgtggcagc
gctgctgcttccatagacccctcagcctacgaccagcgctctctgtccagccccggccag
cactcgccgctccctcccagaggtcagggttcagccagtgggtggggcagcaggaggtca
agttggaacagcctcaaccgcgcccccagcctcaaacgcagcaaaaccagcggagagagg
gagagtctgctctcaggggagggaagaggagaggaggaagagggggccttagagctgcta
caggtgtcctctctgggcccgtctgtaacaggggagtacggggactgtaacgggaggagt
cttcatcacatgacctatgaccccaacaaggacctttcacctgacgatgacatggaggag
gacaacctgtggttccgggtcaggagaacgctgcagagccacaagccacgctggtgtaga
gaacatgaagactggaacctctacctgttctccctcagaactctctccgctccctcctct
aggttccgtgtgtgggctaaggggatgatctctcataagatgtttgatcacgtggtcctc
ctcttcatcttcctcaactgcatcaccatcgctctggagagacccggcattctgcctcac
agcaccgagagagtgtttctgagtgtctccaactacgtgttcactgtcatcttcctggct
gagatgactgtcaagattgtagcgttggggttctgctggggtaaacagagctacctgaag
agcagctggaatgttctggatgggatcctggtgtttgtctctctggtggacatcctggtt
tctctggccttgactggagggaaccgcatcctgggaatcctcagagtactacgactgcta
cgcacactacgacctctcagggtgatcagtcgagccccagggctgaagctggtagtggag
actctgatcacgtctctgagacccatcgggaacatcgtcctcatctgctgcgctttcttc
actgtgtttggaatactgggagtacagctgttcaagggtaaattctacctctgtgaaggc
ctggacaccagaaacatcaccaccaagtcagactgtctgctggccaactaccgctggaca
cgcaggaaatacaagatagatatagacaacctgggacaggcgctgatgtctctgttcgtg
ctgtcctgtaaggatggatgggtcaacatcatgtatgatggcctggatgcagtgggagta
gaccagcagccggtgaggaaccacaacccgtggatgctcctctacttcatctccttcctc
ctcatcgtcagtttcttcagtataaccctcaacatgttcgtgggtgtggtcgtggagaac
ttccacaagtgtcgtcaggaccaggaagaggataaacccgagcagcggctacgggaagag
aagaggctcaaaatcctggagaaaagcgcaggagtaaggagaaggatggtgccggtctgt
aaggcccaacagagaccctactatgcagactactcccctgtgcgtctcaccatccacacg
ttgtgcaccagcaactacctggacctcttcatcaccatcatcatcggcatcaacgtcgtc
accatgagcatggagcattacaaccagccacagtatctagaggaggctctgaagtactgt
aactacctgtttacctgtatcttcatcatcgagaccctgctgaaactagtggccttcgga
ctgcacaggttctttaaagacaggtggaaccagctggacctggccatagtgctgctgtcc
atcatgggcatcactctggaggagctgaagatgaacgcatcgctacccatcaaccccacc
atcatcaggatcatgagagtcctgaggatcgctagagtgttgaagctgttgaagatggct
acagggatgagagctcttctggacacggtcatgcaggccttgccacaggtggggaatctg
ggtctgctcttcacttgctgttcttctgggaagagaatatgtgtgtgtgtgtgtgtgtgt
gcgtgcgtgtgtgtgtgtgttacagagtgtaacgacagtaatccgtgtgagggtctgagt
cgccacgccacctttgagaactttgggatggcgtttctcacgctgttcagagtctctact
ggggacaactggaacggcatcatgaaggacacgctgcgtgagtgtcgtccagaggagcgc
tcctgtctgacctaccttcctctgatgtctccggtttacttcgtgaccttcgtcctcatg
gcccagttcgtgctggtcaacgtggtggtggcggtgctgatgaaacatctggaggagagc
aacaaggaagccaaggaggatgcagagatggacgccgagatcgcgctggagatggagaga
gctagacgtcttagctccgcctctaacgagtcggcgctaggcggggcctacgtggggcca
cgcccacactcacctggtcaggaggaggagggtcagtgcagccaggaggaggagctcctg
tccccaaggaagatgtccgtatccaggatgcattctctccctaacgacagctacatgttc
ccttctgtacgatctgccagcgccccctaccctctacaggaacacagcagccccctgcac
caagcctcaggtacacagcagccccctgccctctacaggaacacagcagccccctaccct
ctacaggaacacagcagccccctgcaccaagcctcaggctctgtgacatcggtgcactcc
cagccatgcgaagaccaggctgtactgcccggcctctctcaccctgttccccctcacatc
gccccgccaaggccctcgcccagggggctgcgtagacaggtggctgtgaaggtggactcg
gtggaggttcagagtgttgcctcagtagacaggcaggaccccctctcaaccctccgcctg
ctctccccctcccgccccctctctccccccttcctcttggatcccgccgacgaggaggtg
tggcacatcaccagctcagcgcgccattggtgggacagacatggaagtgggcggtgtcac
tccctctccccctacgcctcccccgactccccaccctccctgaggagccgagggagtgcg
ctcagcctgctgggggcggggctaaaagctcacgacccgaggaagggcttcagcgtagac
acccagggcttcctggataaaccccgttgtcctgacgaccagcgacgacactccatcgag
atctgcccgtcccctccagaggacccactgctaggggaggtggacggggaagagaggagg
cccaggggtcaggggtcagaggttagaggtcacaggaagaagaggatgagcccaccctgc
atctccatccaccccccgtgtgacccagcaggccgcgccccctcggagccgcaggcagac
tgcaacccgctgctgagacgcaggaccccctcctacgacgtcgccgactcacacactccc
acacacaggctgacgccgacacactcaccggtacgcacactcacgcctacacacacgcca
acactaacgccgacacatcaccacacactcgtacagactctccctcacgcagtaacacac
acccagacacacacacacacacacaccgcctgccccatgcacacactcttatccgtacac
atactctacctcattcacacacacacactccgtcccccacacacaccctgtccctga
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