Oncorhynchus tshawytscha (Chinook salmon): 112248914
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Entry
112248914 CDS
T05605
Symbol
grin1b
Name
(RefSeq) glutamate receptor ionotropic, NMDA 1b isoform X1
KO
K05208
glutamate receptor ionotropic, NMDA 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04020
Calcium signaling pathway
otw04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
112248914 (grin1b)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
112248914 (grin1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
otw04040
]
112248914 (grin1b)
Ion channels [BR:
otw04040
]
Ligand-gated channels
Glutamate (ionotropic)
112248914 (grin1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lig_chan
ANF_receptor
Lig_chan-Glu_bd
SBP_bac_3
Ion_trans_2
Peripla_BP_6
SIP
DUF6724
Motif
Other DBs
NCBI-GeneID:
112248914
NCBI-ProteinID:
XP_024274123
LinkDB
All DBs
Position
Unknown
AA seq
901 aa
AA seq
DB search
MRVFLLAFFISCSCAGGGCEPKIVNIGAVLSQKRYEQVFKDAVTQANTLYGKDKFKMNAI
SVTHKPNAIQMALSVCEDLISNQVYAILVSHPPQSNDHLTPTPVSYTAGFYRIPVVGLTT
RMSIYSDKSIHLSFLRTVPPYSHQAQVWFDMMREFRWNHIILIVSDDHEGRAAQKRLETL
LEERETKNKNKNYENLDQLSYDNKRGPKAEKVLLFSQDTNLTSMLLEAKDLEARVIILSA
SEDEAASVYKAARQLNMTGSGYVWLVGEREMSGKALSEAPDGLLGLQLINGKNESAHIND
AVAVVAQSIQELFEKENITEPPRGCVGNTNIWRTGPLFKRVLMSSKYPDGLTGRIEFNDD
GDRRFATYSILNYQKTRLVQVGIFNGTQVVMNPQRKIIWPGGETEKPRGYQMSTRLKIVT
IHQEPFVYVQPTTSDGTCQKEKTVNGLKDVQKVICTGPNGTIPGQPIVPQCCYGFCIDLL
IKLADTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLGGLADMIVAPLTINNER
AQYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYLLDRF
SPFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFAMII
VASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMY
RHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMR
KDSPWKQNVSLSILSSHENGFMEELDKTWVRYQECDSRSNAPATLTFENMAGVFMLVAGG
IVAGIFLIFIEIAYKRHKDARRKQMQLAFAAVNVWRKNLQPYPTDITGQLNLSDPSVSTV
V
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgtatttctgcttgcatttttcatctcctgctcctgtgcgggtggtggatgtgaa
cccaagattgtcaatatcggagcggtcctgagccagaagaggtatgaacaggtgttcaag
gacgccgtcacccaggcaaacacgctgtatgggaaagataagttcaagatgaacgccatc
tctgtcactcataaacccaatgcaattcagatggctctctccgtctgcgaggacctcatc
tcgaaccaggtgtatgccattctggtgagccacccgcctcaatcgaatgaccatctgacc
cccacacccgtgtcctacaccgcagggttctaccgtatccctgtggttgggctcaccacc
cgcatgtccatctattcggacaagagcatccacctgtctttcttgcgtaccgtgcccccc
tactcccaccaagcccaggtgtggttcgacatgatgagagagttccgctggaaccacatc
attctgatagtgagcgacgaccacgagggccgcgctgcccagaagaggctggagaccctg
ttggaggagagggagaccaagaataaaaacaagaactatgaaaacctcgaccaactgtcc
tatgacaacaagcgaggacccaaggcagagaaagttctcctgttcagccaagacaccaac
ctgacatccatgctgctggaggccaaggacctggaggctcgcgtcatcatcctctctgcc
agcgaggacgaagcggcgtcggtctacaaagctgcccgccagctcaacatgacgggctct
ggctacgtgtggctggttggagagagggagatgtctggtaaagctttgagtgaagcacca
gatggcttgctcggccttcagctcatcaacggcaagaacgagtcggcgcatatcaacgat
gccgtggctgtggtggcacagtccatccaggagctctttgagaaggagaacatcacagaa
ccgcctcgcggctgtgtaggcaacacaaacatctggaggactggaccgctcttcaaacga
gtgctgatgtcatccaagtacccagatggcctgacaggacgcatagagtttaatgacgat
ggtgacaggcgttttgctacctacagcatcctcaactaccaaaagaccaggctggtgcaa
gtgggcattttcaacggcacccaagtggtgatgaatccgcagaggaagatcatttggcca
ggaggagagacggagaagccaagaggataccagatgtctaccagactaaagatagtaacc
attcatcaggagccatttgtctatgtccaacccacaacaagtgacggaacttgccaaaaa
gagaaaactgttaatggacttaaagatgtccaaaaagttatatgcactggccccaatgga
accataccaggacagcctatagtaccccaatgctgctacggcttttgcattgacctcttg
attaaactagcggataccatgaacttcacctatgaggttcatctggtggctgatgggaag
tttggtacacaggagcgggtgaacaacagcaacaagaaggagtggaacggcatgatggga
gaactcctgggtggcctggcagacatgattgtggctccgctcacgatcaacaacgaacgc
gcccagtacatcgagttctcaaaaccctttaagtaccaggggcttaccatcctcgtgaaa
aaggaaataccacgcagtactttggattcgttcatgcagccctttcagagcaccctgtgg
ctgctggtgggtctatcggtccatgtggtggcggtgatgctctacctattagaccggttc
agcccatttggaaggtttaaagtgaatagcgaagaagaagaagaggacgccctcacctta
tcctccgccatgtggttctcttggggggtccttttgaactccgggataggagaaggagca
ccccggagcttttcagcaaggatcttaggtatggtgtgggctggatttgccatgatcatt
gtggcatcctacacagccaatctggcagccttcctagtgttggaccggcctgaggagcgc
atcaccggcatcaatgaccccaggctgcgaaacccatcagacaagttcatctacgccaca
gtgaagcagagttcggtggacatctacttccggcgccaagtggagttgagcaccatgtac
cgccacatggagaagcacaactacgaaagcgctgctgaggccatccaagctgtgcgcgac
aacaaactgcacgcgttcatctgggactctgccgtcctggagtttgaggcatcacagaag
tgtgacttggtgacaacgggagagctgttcttccgctccggcttcggcataggcatgagg
aaggacagcccttggaagcaaaacgtttccctgtccattcttagctctcatgagaatggg
ttcatggaggaactagataaaacctgggtgagataccaggagtgtgactccaggagtaat
gccccggccaccctcacttttgagaacatggcaggtgtgttcatgttggttgctgggggt
atcgttgctggaatcttcctcatctttattgagattgcgtataagcgccacaaagatgcc
cgcaggaagcagatgcagctggccttcgctgcggtcaacgtatggaggaagaacctacag
ccttatcccacggacatcacaggccagctcaacttgtcagacccctctgtcagcacggtg
gtgtga
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