Oncorhynchus tshawytscha (Chinook salmon): 112252086
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Entry
112252086 CDS
T05605
Symbol
vcam1b
Name
(RefSeq) vascular cell adhesion protein 1b
KO
K06527
vascular cell adhesion molecule 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
112252086 (vcam1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
otw04090
]
112252086 (vcam1b)
04091 Lectins [BR:
otw04091
]
112252086 (vcam1b)
CD molecules [BR:
otw04090
]
Proteins
112252086 (vcam1b)
Lectins [BR:
otw04091
]
I-type lectins (Siglecs)
112252086 (vcam1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
C2-set_2
V-set
C1-set
ICAM_N
ICAM1_3_5_D2
REJ
Ig_C17orf99
Pedibin
Motif
Other DBs
NCBI-GeneID:
112252086
NCBI-ProteinID:
XP_024278785
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All DBs
Position
LG06:complement(14958422..14972813)
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AA seq
806 aa
AA seq
DB search
MSLLWIVILPVTAFAFHVELKPKSAFFRAGDRQELRCSVKDCNEKVTMSWALLGDKPMFA
KIHTSGSESVAAFDPVMTVHDDILLCKVSCGALTKQQRVVVKVYSFPEAPVISGYDHLLL
GQSNTLTCEVIDAYPVEHLRLEWLRGDSMLQTDAESVVSTYRFTPTPEDKETSITCRASH
DQDGVPDEEKTKETTVSLTVLYAPQNISISEPTAVRVGSSLTLSCHAEGNPRPDTQWKAI
GPDGQAVIVGQSEELVLTEMTLVDAGQYECVVSNTIGNITASVNVIVQAPPTNTTITVSP
ANEVKEGESVTVSCLSDGAPVVRMVLRRLSEDQDVELQSSNGFSTSFTLSSALLADSALY
QCQAYNEHGSQKVSTLLSVEEYPLEVAMDVGVTAEMGSNLVLSCRAWGCPQPAFYWRSML
DMPVHSRAHTQDSLSQLYLGPLGLINEQAYTCEAKCGSVIKAKHAEVKVFSFPSDPIIEN
TGPFLEHGVGIFFCSVANVYPASLLQIQWLDGEIELASEMGQYSSELQNVTSTLSFSIGP
EDQGRQITCRVSLQMDEVPQSGRERQAVTVLELHYAPRGTTITVSPGNEVKEGESVAVSC
LSDGVPVGRMVLRRLSEDQDIELQSSNGSSTSFTLSSALLADSALYRCEAFNELGSQRAS
TYITVKAPPRNTTVLIYPSAEVQEGQNVTICCHSVSFPPPAVVLRKLDNGTELYSPDGNF
LLVNLTPNDTGLYQVNVTNDLGYETEIFSINVIEKHSSTSPDWNHIVIPAVCVGIMVTTM
GLILDYLRRARRKGFYELAKCKPGSA
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atgtctctgttatggatagtgatactaccagtaacagcctttgcatttcatgtggagcta
aaaccaaagagtgcatttttcagagctggtgataggcaggagctgcgatgttcggtgaag
gattgtaacgaaaaggttactatgtcctgggctttgctgggggataagcccatgtttgct
aaaatacacacctcaggatcggaatccgtggcggcctttgaccctgtgatgacagtacat
gatgacatacttctctgcaaagtcagttgcggagcattgaccaaacaacagcgtgtggtt
gtcaaagtgtactcatttccagaggcacctgtcatatcaggctacgaccatcttctcttg
ggccagtccaacactctgacatgtgaggtgatagatgcttatcccgtggagcacctgcga
cttgagtggctgcgaggagacagcatgctccagacagacgcagagtccgttgtatctacc
tacaggttcacgccaaccccagaggacaaagagacaagcatcacatgcagagcctctcac
gatcaggatggtgtgcctgatgaagagaagaccaaggaaaccaccgtatctctcacagtg
ctttatgcgccacagaatatatcaatatctgagccgactgctgtgagagttggctccagt
ctcacgttgtcatgccatgctgaagggaaccccagaccagatacacagtggaaggccatt
ggtccagatggacaggctgttattgtggggcagagcgaggagcttgtccttacagagatg
acactggtggatgctggtcaatatgagtgtgtggtgagcaacaccattggaaacatcaca
gccagcgtgaacgtcattgttcaagctcccccaaccaacaccaccatcacagtgagccca
gccaacgaggtgaaggaaggggagagcgtgacggtgtcctgcctgtcggacggagctccg
gtggtacgtatggtgctgaggagactctctgaggaccaggatgtagaactccagtccagc
aacggattctccacctccttcaccctctcctccgccctgctagcagactctgctctctac
cagtgccaggcctacaatgaacatggcagtcagaaggtcagcaccttgctctctgttgaa
gagtatcccctggaggtggcgatggatgtgggggtgacggctgagatgggatccaacctg
gtgctctcctgccgggcttggggctgtccccagccagccttctactggaggagcatgctg
gacatgcccgtccatagccgtgcacacacccaggactccctctcccagctctacctgggc
ccacttgggctgatcaacgagcaagcctacacctgtgaggccaagtgtggctctgtcatc
aaggccaagcacgctgaggtcaaggtcttctctttcccctcggaccctatcatcgagaac
actggcccctttctggaacacggtgttggcatctttttttgttcggtagccaacgtctac
ccagccagtctcctgcagatccagtggcttgatggggaaatcgagctagcctccgagatg
ggacagtattccagtgaactccagaatgtgacgtcaacgctttctttctcgattggaccg
gaggaccagggcagacagatcacctgcagagtcagtcttcagatggatgaagtccctcag
agtgggagagagaggcaggcagtgactgtactggagctccactatgcccccagaggaacc
accatcacagtgagcccaggcaatgaggtgaaggaaggggagagcgtggcggtgtcctgc
ctgtcggacggagttccggtgggacgtatggtgctgaggagactctctgaggaccaggat
atagaactccagtccagcaatggctcctccacctccttcaccctctcctctgccctgcta
gcagactctgctctctaccggtgcgaggccttcaatgagctcggcagccagcgagctagc
acatacattacagtcaaagcacctcctaggaacacaacagtcctgatatatccatctgct
gaggtgcaggaaggccaaaatgtcaccatctgctgtcactctgtcagtttccccccacct
gctgtggttttaaggaaactggataatggcacagagctctactccccggatgggaacttc
ctgctggttaaccttacgcccaatgatacaggcctataccaggtgaatgttaccaatgac
ctgggttatgagaccgagatcttcagcatcaatgtcatagagaagcactccagtacttca
ccagactggaaccacatagtcattcctgctgtctgtgtgggtatcatggtgaccaccatg
ggcctaatcctggactacctgaggagagccaggaggaagggcttctatgagctggcaaag
tgtaagcccgggtctgcatag
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integrated database retrieval system
