Oncorhynchus tshawytscha (Chinook salmon): 121845138
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Entry
121845138 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: voltage-dependent T-type calcium channel subunit alpha-1H-like
KO
K04855
voltage-dependent calcium channel T type alpha-1H
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04010
MAPK signaling pathway
otw04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121845138
04020 Calcium signaling pathway
121845138
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
otw04040
]
121845138
Ion channels [BR:
otw04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
121845138
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
FAM176
Motif
Other DBs
NCBI-GeneID:
121845138
NCBI-ProteinID:
XP_042171816
LinkDB
All DBs
Position
Unknown
AA seq
1898 aa
AA seq
DB search
MIVILLNCVTLGMYQPCEDVTCQAEWCLILQVFDDCIFAFFAVEMVIKMVALGIFGSKCY
LGDTWNRLDFFIVMAGMMEYSLDGHNASLSAIRTVRVLRPLRAINRVPSMRILVTLLLDT
LPMLGNVLLLCFFVFFIFGIVGVQLWAGLLRNRCFMGEDFRTLYNLSLSVYYQPEESEED
PFICSAIRENGMLRCHDVPPYSEGGAECSLPAPSLGGEGGARDGCVNWNQYYNVCRPGNV
NPHKGAVNFDNIAYAWIAIFQVITLEGWVDIMYYVMDAHSFYNFIYFIFLIIVGSFFMIN
LCLVVIATQFAETKQRENALMREQRARYMSNDSTLASYSEPGSCYEEMLRYVSHLYRKLI
RRVQRMYTTWHSKRRKKVNPNGGGSGPGVGRRTSGNAPWLRPVHNLLQHHQRHHCRHSNG
GHTPVATGGEELEMRSLPVPCRDPSVTPGLGSSLLGRLNGGMNYPTILPSFVCSYRSFTP
KPIPTHPHKPLPTQPHIPTHPHNPLPYSPLSRHPHSPQPTQPHIPLPTQPQRPLPTQPSP
LSENSPDPLSKLHQLMGQHSRPRLLYQLAGVVPSPLLLELLGCPLCARALEGMELDLSDL
EGSRGEAHTLHVFPQGGEGRGGRGRRRRKAGLGAGLGIGVKRASNRLLDLGTAFRDRLKR
IVDSKYFNRGIMTSILINTLSMGIEYHQQPVELTDILEISNIVFTCMFLLEMMFKLLAFL
SFGYIKNPYNIFRVCVMCSSVWEIVGQADGGLSVLRTFRLLRVLKLVRFLPALRRQLVVL
MKTMDNVATFCTLLMLFIFTFSILGMHLFGCKFNQQMENGDTIPDRKNFDSLLWAIVTVF
QILTQEDWNVVLYNGMASTSPLAALYFVALMTFGNYVLFNLLVAILVEGFQAEGDANRAD
SDDDKRSDDDGEEEKKEKVGELEDTELKMYSLMMTANGHTDRNTLAPPITITRTAATPVS
TPKSSLGPESVLGEGLVCSDFGDSRRGSAAASIDPSAYDQRSLSSPGQHSPLPPRGQGSA
SGWGSRRSSWNSLNRAPSLKRSKTSGERESLLSGEGGGEEEEGALELLQVSSLGPSVTGE
YGDCNGRSLHHMTYDPNKDLSPDDDMEEDNLWFRVRRTLQSHKPRWCREHEDWNLYLFSP
QNSFRVWAKGMISHKMFDHVVLLFIFLNCITIALERPGILPHSTERVFLSVSNYVFTVIF
LAEMTVKVILCFSLGFCWGKQSYLKSSWNVLDGILVFVSLVDILVSLALTGGNRILGILR
VLRLXRTLRPLRVISRAPGLKLVVETLITSLRPIGNIVLICCAFFTVFGILGVQLFKGKF
YLCEGLDTRNITTKSDCLLANYRWTRRKYNFDNLGQALMSLFVLSCKDGWVNIMYDGLDA
VGVDQQPVRNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQDQEEEEQRLREEK
RLKILEKKRRSKEKDGAEAQQRPYYADYSPVRLTIHTLCTSHYLDLFITIIIGINVVTMS
MEHYNQPQYLEEALKYCNYLFTCIFIIETLLKLVAFGLHRFFKDRWNQLDLAIVLLSIMG
ITLEELKMNASLPINPTIIRIMRVLRIARVLKLLKMATGMRALLDTVMQALPQVGNLGLL
FMLLFFIYAALGVELFGKLECNDSNPCEGLSRHATFENFGMAFLTLFRVSTGDNWNGIMK
DTLRECRPEERSCLTYLPLMSPVYFVTFVLMAQFVLVNVVVAVLMKHLEESNKEAKEDAE
MDAEIALEMERARRLSSASNESALGGAYVGPRPHSPGQEEEGQCSQEEELLSPRKMSVSR
MHSLPNDSYMFPSVRSASAPTLYRNTAAPCTKPQVHSSPLPSTGTQQPPTLYRNTAAPCT
KPQVHTLLFRVTKGRVYYRQLLMFNEVLRLTRVFYNLQ
NT seq
5697 nt
NT seq
+upstream
nt +downstream
nt
atgatagtgattctcctgaactgtgtgactctggggatgtaccaaccctgtgaagacgtc
acctgtcaggcagagtggtgcctcatactacaggtgtttgacgactgtatctttgcgttt
ttcgcggtggagatggtcattaagatggtggctctggggatcttcggttctaagtgttac
cttggcgacacttggaaccgactggacttcttcatcgtcatggcagggatgatggagtat
tctctggacggacacaacgccagtctgtcagctatcaggaccgtacgcgttctgcggccg
ctccgggcaatcaacagagtccctagtatgcgtatcctggtgactctgctcctagacact
ctccccatgctgggtaacgtcctgctcctctgtttcttcgtcttcttcatcttcggcatc
gtcggcgtgcagctgtgggcggggctactgagaaacaggtgcttcatgggagaagacttc
agaacgctctataacctgtcattgagtgtgtactaccagccggaggagagcgaggaggac
cccttcatctgctcagcaattcgggagaacggaatgttgcgttgccatgacgtcccgccc
tacagcgagggaggggccgagtgctcgctgcccgcgccctctcttggcggggagggcggg
gccagagacggctgtgtgaactggaaccagtactataacgtctgtcggcccggcaacgtc
aaccctcacaaaggagcggtgaactttgacaacatagcctacgcatggatagccatattc
caggtgataaccctggaaggctgggtggacatcatgtactacgttatggatgctcactcc
ttctacaattttatatattttatattcctcatcatagtgggctctttcttcatgatcaac
ctgtgcctggtagtcatagcgacccagtttgcggagacgaagcagcgtgagaacgcgttg
atgcgcgagcagcgagcgcgttacatgtccaacgacagtactctggccagctacagcgaa
ccgggatcctgctacgaagagatgctgagatacgtttcacacctctaccgtaaactgatc
cgacgagtacagcgcatgtacacaacctggcacagtaagcgtcgtaagaaggtgaaccct
aacggaggaggaagtggtccgggggtcggccgcagaacatccggaaacgctccctggctc
cgccctgtacacaacctgctgcaacatcaccagcgccaccactgtcggcacagcaacgga
ggacacacccccgtagcaacaggtggggaggagctggagatgaggtcacttcctgtccct
tgtcgtgacccctctgtgacccctgggctggggtcgtctctcctgggtcgtctgaacgga
ggaatgaactaccccaccatcctgccctccttcgtctgcagctaccgcagcttcaccccc
aagcccatccccacacacccccacaagcccctccccacacagcctcacattcccacacac
ccccacaaccccctcccttacagccccctctccagacacccccacagcccccaacccaca
caaccccacatacccctccccacacagccccagaggcccctccccacacagccctcgccc
ctctcagaaaacagtccggaccccctcagcaagctgcatcaactcatgggacagcacagc
cgtcctcggctgctgtaccagctggctggcgtggtgccctcccctctcctcctggagctg
ttgggctgcccgctgtgtgcccgcgccctagagggcatggagctggacctgagcgacctg
gaggggtctaggggagaggcccacaccctgcacgtcttcccccagggaggagaggggcgc
ggcgggcgtgggaggcgccggcggaaggcagggctgggggcagggctggggatcggggtg
aagagggccagtaacaggctgctggatctggggacagcattcagagacagactgaaacgc
atcgtagacagcaagtacttcaacagagggatcatgacctccatcctcatcaacactctc
agtatggggatagaataccatcaacagccggtggagttgactgatatcctggagatcagt
aacatcgtgttcacctgcatgttcctcctggagatgatgttcaagctgctggccttcctg
tctttcggctatatcaagaacccctacaacatcttccgtgtgtgtgtcatgtgttccagt
gtttgggagatcgttgggcaggcggacggcggtctgtctgtcctgcgtaccttccgtctg
ctgcgggtcctgaagctggtccggttcctgcccgccctgcgcagacagctggtggttctg
atgaagactatggacaacgtagccaccttctgtacactgctcatgctcttcatcttcacc
ttcagtatcctaggcatgcacctgtttgggtgtaaatttaatcagcagatggagaacgga
gacaccatcccagaccgcaagaactttgactcgctactctgggccatcgttactgtgttc
cagatcctgactcaggaggactggaatgtggtcctgtataatggcatggcctccacctct
cctctcgctgctctctactttgtggctctgatgacgtttgggaactatgtcctcttcaat
ctgctggtggccatcttggtggagggcttccaggctgagggtgatgccaaccgggcggac
tctgacgatgacaagaggtctgatgacgatggagaggaggagaagaaggagaaggttgga
gagctggaagacacagagctgaagatgtattctctgatgatgacggccaacggtcacacg
gaccgcaacactctggcccctccaataaccatcacgcgcacagcggcgacacccgtgtcg
acgcccaagagctcattgggccccgagtccgttctgggagaggggctcgtgtgttcagac
ttcggggactctcgtcgtggcagcgctgctgcttccatagacccctcagcctacgaccag
cgctctctgtccagccccggccagcactcgccgctccctcccagaggtcagggttcagcc
agtgggtggggcagcaggaggtcaagttggaacagcctcaaccgcgcccccagcctcaaa
cgcagcaaaaccagcggagagagggagagtctgctctcaggggagggaggaggagaggag
gaagagggggccttagagctgctacaggtgtcctctctgggcccgtctgtaacaggggag
tacggggactgtaacgggaggagtcttcatcacatgacctatgaccccaacaaggacctt
tcacctgacgatgacatggaggaggacaacctgtggttccgggtcaggagaacgctgcag
agccacaagccacgctggtgtagagaacatgaagactggaacctctacctgttctcccct
cagaactcgttccgtgtgtgggctaaggggatgatctctcataagatgtttgatcacgtg
gtcctcctcttcatcttcctcaactgcatcaccatcgctctggagagacccggcattctg
cctcacagcaccgagagagtgtttctgagtgtctccaactacgtgttcactgtcatcttc
ctggctgagatgactgtcaaggtaatactctgtttcagtctggggttctgctggggtaaa
cagagctacctgaagagcagctggaatgttctggatgggatcctggtgtttgtctctctg
gtggacatcctggtttctctggccttgactggagggaaccgcatcctgggaatcctcaga
gtactacgactgnctcgcacactacgacctctcagggtgatcagtcgagccccagggctg
aagctggtagtggagactctgatcacgtctctgagacccatcgggaacatcgtcctcatc
tgctgcgctttcttcactgtgtttggaatactgggagtacagctgttcaagggtaaattc
tacctctgtgaaggcctggacaccagaaacatcaccaccaagtcagactgtctgctggcc
aactaccgctggacacgcaggaaatacaacttcgacaacctgggacaggcgctgatgtct
ctgttcgtgctgtcctgtaaggatggatgggtcaacatcatgtatgatggcctggatgca
gtgggagtagaccagcagccggtgaggaaccacaacccgtggatgctcctctacttcatc
tccttcctcctcatcgtcagtttcttcgtcctcaacatgttcgtgggtgtggtcgtggag
aacttccacaagtgtcgtcaggaccaggaagaggaggagcagcggctacgggaagagaag
aggctcaaaatcctggagaaaaagcgcaggagtaaggagaaggatggtgccgaggcccaa
cagagaccctactatgcagactactcccctgtgcgtctcaccatccacacgttgtgcacc
agccactacctggacctcttcatcaccatcatcatcggcatcaacgtcgtcaccatgagc
atggagcattacaaccagccacagtatctagaggaggctctgaagtactgtaactacctg
tttacctgtatcttcatcatcgagaccctgctgaaactagtggccttcggactgcacagg
ttctttaaagacaggtggaaccagctggacctggccatagtgctgctgtccatcatgggc
atcactctggaggagctgaagatgaacgcatcgctacccatcaaccccaccatcatcagg
atcatgagagtcctgaggatcgctagagtgttgaagctgttgaagatggctacagggatg
agagctcttctggacacggtcatgcaggccttgccacaggtggggaatctgggtctgctc
ttcatgttgctgttcttcatctacgcagcactgggagttgagctgtttgggaaactggag
tgtaacgacagtaatccgtgtgagggtctgagtcgccacgccacctttgagaactttggg
atggcgtttctcacgctgttcagagtctctactggggacaactggaacggcatcatgaag
gacacgctgcgtgagtgtcgtccagaggagcgctcctgtctgacctaccttcctctgatg
tctccggtttactttgtgaccttcgtcctcatggcccagttcgtgctggtcaacgtggtg
gtggcggtgctgatgaaacacctggaggagagcaacaaggaagccaaggaggatgcagag
atggacgccgagatcgcgctggagatggagagagctagacgtcttagctccgcctctaac
gagtcggcgctaggcggggcctacgtggggccacgcccacactcacctggtcaggaggag
gagggtcagtgcagccaggaggaggagctcctgtccccaaggaagatgtccgtatccagg
atgcattctctccctaacgacagctacatgttcccttctgtacgatctgccagcgcccct
accctctacaggaacacagcagccccctgcaccaagcctcaggtacacagcagccccctg
ccctctacaggaacacagcagccccctaccctctacaggaacacagcagccccctgcacc
aagcctcaggtacacacactcttatttagggttacaaaggggagggtgtattaccggcaa
cttctaatgttcaatgaggttctaagactaactagagtgttctataatctacagtga
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