Oscillibacter valericigenes: OBV_19450
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Entry
OBV_19450 CDS
T01636
Symbol
polC
Name
(GenBank) PolC-type DNA polymerase I
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
ova
Oscillibacter valericigenes
Pathway
ova03030
DNA replication
ova03430
Mismatch repair
ova03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ova00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OBV_19450 (polC)
03430 Mismatch repair
OBV_19450 (polC)
03440 Homologous recombination
OBV_19450 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ova03032
]
OBV_19450 (polC)
03400 DNA repair and recombination proteins [BR:
ova03400
]
OBV_19450 (polC)
Enzymes [BR:
ova01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
OBV_19450 (polC)
DNA replication proteins [BR:
ova03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
OBV_19450 (polC)
DNA repair and recombination proteins [BR:
ova03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
OBV_19450 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
HHH_6
RNase_H_2
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
BAK99143
LinkDB
All DBs
Position
1841798..1845712
Genome browser
AA seq
1304 aa
AA seq
DB search
MLTGAAIDKTLRTIDLQMETRTELSQGDLKELGREICAVYGFSDAQIKAVCRRPEPTREA
ERYAPQGAAEKKRDGAVKDVIYGEKKLSGKTVSVGSLDLKTGKATVTGKIFAFDCHETRR
PGLWRMSFDITDYTGSVTVQKNLTAAEASKLDGKLKPGIWVAVQGKMEPTWDGKDIQMAP
YVINSVAHKEREDTAEVKRVELHLHTRMSNMDALTDTQEVVKEAIRWGHPAIAITDHGVA
QSFPDAWHASGDKIKILYGMEGYFINNLDDRVAVHGTQDCDLDGEFVCFDIETTGLKVMQ
EAITEIGAVVLKNGEITDTFQTFVDPERRLTPEIIGLTGITDEMLKGAPRLKDALTAFLK
FADGRPLAAHNAEFDISFIREGCKKTGLPFHPTYVDSLILAQNLLPKLNKYKLDIVAEAL
DLPAFNHHRASDDGATVGYMLIPFFKMLKDRGVTTLQAVNSEMEKLRPLGSKSNRFPKHI
ILLARNRVGLKNLYKIITASNLKYFKRVPTVPKTLLNQYREGLIVGAACEAGELFRAVAD
HKDWDELKRIASYYDYLEIQPVCNNMFMLRNGDVQSEEDLRELNRTVVRLGEELGKPVCA
TGDVHFREPEDEVYRHILLASKKFPDADASLPIYFKTTDEMLKEFSYLGKEKAYEVVVTN
TRAVADSVESFELLPPDLYPPRLENSEEDLNRMVWEKAHELYGEKLPQLVVDRLNVELGS
ILGKYDVVYMSAQKLVQRSLENGYLVGSRGSVGSSLVAYMSGITEVNSLPPHYRCPKCKN
VEFIQDGSYGCGADMPDKLCPVCGEKYVKDGFDIPFETFLGFGGGKVPDIDLNFSGEYQA
KAHRHAIEMFGETQVFRAGTIGTLAEKTAYGMVKKYLEENGMTAGRAEENRLTLGCVGVR
RTTGQHPGGLVVVPDDMEMEDFCPVQHPADDSESDIITTHFEYHSMEANLLKLDMLGHDD
PTMVRMMEDLTGVDPHSIPLDDPDTMSIFTSSKVLGYEHDDVVGETGAVAIPEFNTRFTR
GMLMDTQPKDFNTLVRLSGFSHGTDVWMGNARELIVGGVASVLETVGCRDDIMLYLISKG
LDAKMSFKIMEAVRKGKVKKGGFQDGWVEAMHEHDVPDWYIDSLAKIGYLFPKAHAVAYV
TMAFRIAWYKVHEPLAFYATFFTVRAKAFDAEYCCAGKDAVKRKIREIENNKDASAVEQD
LMTTLEVCYEFYLRGFHFDTISIYESEATKFKVTENGLLPPFTAVHGLGETVAIDTVEKR
KGKTFISIEEFSMCCNKLSKTHIEQLKKLGAFAGMAETSQITLF
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atgctcaccggcgcggccatcgacaagaccctgcggaccattgatttgcagatggagacc
cggacggagctgagccagggggacttgaaggagttgggccgggaaatttgcgcggtgtac
ggattctccgacgcacagatcaaggccgtctgccgcaggccggaaccgacgcgggaggca
gagcgttacgcaccccagggcgcggcggaaaaaaagagggacggcgcggtgaaggatgta
atctacggcgaaaagaagctcagcggaaaaaccgtttcggtggggtcgttggatctcaag
accggaaaagccacagtcaccggcaaaatttttgccttcgactgccacgagacccgccgt
cccgggctgtggcgcatgagcttcgacataactgattacaccgggtccgtcacggtccag
aaaaatcttaccgccgccgaggcgagtaagctggatggcaaactcaagcccggcatatgg
gtggcggtgcaggggaagatggagcccacctgggacggcaaggacattcagatggccccc
tatgtcatcaactccgtcgcccacaaggagcgggaggataccgccgaggtgaagcgggtg
gagctgcatctccacacccgcatgagcaacatggacgctctcaccgatacgcaggaggtg
gtgaaggaggccatccgctggggccaccccgccattgccattacggatcacggcgtagct
cagtcctttccggacgcatggcacgcctccggggataagatcaagattctgtacgggatg
gagggttacttcattaacaatctggacgaccgggtggccgtccacgggacgcaggactgc
gatctggacggcgagttcgtctgcttcgacatcgagaccacgggcctcaaggtcatgcag
gaggccatcacggaaatcggtgcggtggtgttgaaaaacggagagatcacggataccttt
cagacctttgtggacccggagcggcggctgacgccggagatcattggcctcacgggcatc
accgacgagatgctcaaaggcgcacccagactgaaggatgctctgacggcctttttgaaa
ttcgcggatggacgcccgctggcggcccacaacgcggagtttgacatcagcttcattcgg
gaggggtgcaaaaaaacgggccttccgtttcatcccacctatgtggactcactgattttg
gctcagaacctgctgccgaagctgaataagtacaagctggatattgtggcggaggcgctg
gatctgcccgcgttcaaccaccaccgggccagcgacgacggcgcgacggtaggctatatg
ctgattcccttctttaagatgctgaaggaccggggcgtcaccacccttcaggctgtcaac
tccgagatggaaaagctgcggccgctgggcagtaagtccaaccgcttccccaagcacatt
atcctgctggcgagaaaccgggtaggcctgaagaatctctacaaaatcatcacagcgtcc
aacctcaaatatttcaagcgggtccccacggtgccaaaaacgcttttaaaccagtaccgg
gagggcctcatcgtgggcgcggcctgcgaggcgggcgagctgttccgggccgtggcggac
cacaaggactgggacgagctaaagcgtatcgcgtcttattacgactatctggaaatccag
cccgtgtgcaacaacatgttcatgctgcgcaacggcgacgtacagtcggaggaggacctg
cgggaactgaaccggaccgtcgtacggcttggagaggagcttggaaagcccgtctgcgcc
accggtgacgtccacttccgggagccggaggacgaggtataccgccacatcctgctggct
tcgaaaaaatttccggacgcagacgcgagtcttcccatctattttaaaactaccgacgaa
atgctgaaggagttctcctatctggggaaagaaaaggcgtatgaggtggtggtgaccaac
acccgggccgtggcggacagtgttgagagctttgagctgctgccgcccgacttgtatccg
ccgcgccttgaaaattccgaggaggacttgaaccgcatggtttgggaaaaggcccacgag
ctatatggcgagaagctgccccagctggtggtggatcggctgaacgtggaactggggagt
attttgggcaagtacgacgtggtctatatgtccgcccagaagctggtgcagcggtctttg
gagaacggttatctggtgggctcacggggaagcgtgggctcatctctggtggcctatatg
tccggcattacggaggtcaactccctgccgccccactaccgctgcccaaagtgcaagaat
gtggagttcattcaggacggctcttacggctgcggcgcggacatgccggacaagctgtgt
cctgtgtgcggcgagaagtacgtaaaagacggattcgatatcccctttgagactttcctg
gggtttggcggaggaaaggtccccgatatcgacctgaatttttccggcgagtaccaggcc
aaagcccaccgccacgccatcgagatgttcggcgagacccaggtattccgggcgggcacc
atcggaactctggcggagaagaccgcctacggcatggtgaagaagtatctggaggagaac
ggtatgaccgcgggccgggcggaagaaaaccggctgaccctgggctgtgtgggcgtgcgg
cgcaccaccggccagcaccccggcggactggtggtggtgccggacgacatggagatggag
gatttctgccctgtccagcacccggcggacgactccgagagcgacatcatcaccacccac
tttgaataccactccatggaagcaaatctcctgaagctggatatgctgggacatgatgac
cccaccatggtccgtatgatggaggacctgaccggcgtggacccccattccatcccgctg
gacgacccggacaccatgtccatcttcacctccagcaaggtgctgggctatgagcacgac
gacgtggtgggggagaccggggccgtggctatcccggaattcaacacccgttttacccgg
gggatgctgatggatactcagccaaaggatttcaacacgctggtgcggctgtccggtttt
tcccacggcacagatgtgtggatgggtaacgcccgggaactgatcgtgggcggcgtcgcc
tccgttttggagacggtgggttgccgtgatgacatcatgctgtatctgatttccaaaggg
ctggacgccaaaatgagcttcaagatcatggaggccgtccgaaaaggcaaggtgaaaaag
ggcgggttccaggacggctgggtagaggccatgcacgaacacgacgtgccggactggtac
attgactccctggccaagatcggctacctgtttcccaaggcccacgccgtggcctacgtc
accatggcgttccggatcgcatggtacaaggtccatgagccgctggcgttttatgccaca
ttttttaccgtccgggccaaggccttcgacgcggagtattgctgcgcgggtaaagacgcg
gtgaaacggaaaatccgggagatcgaaaacaataaggatgcgtcggcggtggagcaggac
ctgatgaccacgctggaggtatgctatgagttctacctgcggggcttccacttcgatacc
atcagtatctacgaatccgaggccacaaaattcaaggtgacggaaaacggcctcctgccg
cccttcaccgcggtccatggactgggtgagacggtggccatcgacacggtggaaaagcgg
aaggggaagacctttatttccattgaggaattttccatgtgctgcaataaactgtccaag
acccatattgaacagctgaagaaactgggggcgttcgccgggatggcggagaccagccag
atcaccttgttttag
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