Populus alba (white poplar): 118029905
Help
Entry
118029905 CDS
T07314
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
palz
Populus alba (white poplar)
Pathway
palz03020
RNA polymerase
palz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
118029905
09124 Replication and repair
03420 Nucleotide excision repair
118029905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
palz03021
]
118029905
03400 DNA repair and recombination proteins [BR:
palz03400
]
118029905
Enzymes [BR:
palz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
118029905
Transcription machinery [BR:
palz03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
118029905
DNA repair and recombination proteins [BR:
palz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
118029905
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
Motif
Other DBs
NCBI-GeneID:
118029905
NCBI-ProteinID:
XP_034889766
LinkDB
All DBs
Position
Unknown
AA seq
1837 aa
AA seq
DB search
MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVIQIEHSETTERGKPKPGGLSDPRLGTI
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK
FKQALKIKNPKSRLKKILDACKNKTKCDGGDEIDVQGQDNEEPVKKSRGGCGAQQPKLTI
EGMKMIAEYKVQRKKNDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLDPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERSGAPAHIIS
EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTIVKPRPLWTGKQVFNLIIPKQIN
LIRTAAWHMDSERGMITPGDTLIRIEKGELLSGTLCKKTLGTSSGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMEKINETISNAKNEVKDLIRKAQNKEL
EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK
LDSLKMKKAEFDRVFRYEFDDEDWNPTYMMTDHVEDLRNIRELRDVFDAEVQKLEADRYQ
LGTEIATTGDNTWPMPVNLKRLIWNAQKTFKIDTRIGRVSDIHPMEAVEAVDKLQERLKV
VPGDDLLSVEAQKNATLFFGILLRSTLASKRVLQEYRLSREAFDWVIGEIESRFLQSLVA
PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVY
LKPEFNKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDADFVKSYYEMPDE
EVAPEKISPWLLRIELNREMMIDKKLNMADIAEKINHEFDDDLTCIFNDDNAEKLILRIR
IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNAKVSRFDESEGF
KTTEEWMLDTEGVNLLAVMCNENVDARKTTSNHLIEVIEVLGIEAVRRSLLDELRVVISF
DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAET
DYLRGVTENIMLGQLAPIGTGYCALYLNDEMLKNAIELQLPSYMEGLDFGMTPARSPVSG
TPYHDGMMSPMLMSPNLRMSPTVDGVAFSPYVGGMAFSPSTSPASTSIGYSPSSPVYSPG
YSPTSPSYSPASPSYSPASPNYSPTSPTYSPSSPSYSPTSPAYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYNPQSAKYSPSLAYSPSSP
RLSPASPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQYSPS
AGYSPSAPGYSPSSTSQYTPQTSTKGDRDKKDGKSTR
NT seq
5514 nt
NT seq
+upstream
nt +downstream
nt
atggacacgcgatttccttactcgccagcagaggttgctaaagtccgtatggttcagttt
ggcattctcagccccgacgagataaggcaaatgtccgtgatacaaattgagcacagtgag
acaacagaaagaggaaaaccaaagccaggaggattaagcgatccgcggctgggtactatt
gatagaaagatgaagtgtgagacttgcacggcaaatatggcggagtgtccagggcatttt
ggacacttggagcttgccaagcccatgtttcatattgggtttatgaagactgtgcttagt
atcatgagatgtgtttgcttcaattgctcgaagatattggctgatgaagaggatcacaag
tttaagcaagccttgaaaataaagaatcccaaaagcaggcttaaaaagattttggatgcc
tgcaagaataaaactaaatgtgatggtggggatgaaattgatgttcaaggtcaagataat
gaagagccagttaaaaagagccgtggtggctgtggtgctcagcagccaaaactcaccatt
gaaggtatgaagatgattgcagagtacaaggttcaaaggaagaaaaatgatgatcaggaa
cagctgcccgaacctgtggagagaaagcagacccttacagcagaaagggtcttaagtgtt
ttgaagaggataagtgatgaggattgtcagttgctgggcttggaccctaagtatgcacgt
cctgattggatgattctccaagtcctaccaattccaccacctccagtgaggccctctgtg
atgatggatacatcctccaggagtgaggatgatttgactcatcagttagcaatgataatt
cgacacaatgagaatctgagaagacaggagaggagtggggcacctgctcatatcatatcc
gagtttgcacagttgttgcagttccatgtagctacatattttgacaatgagttgcctgga
cagcctcgggccacacagagatcagggagaccaattaaatctatatgtagcaggcttaag
gcaaaggaaggccggattaggggtaatttgatggggaaacgtgtggacttctctgcacgt
acagttattacaccagatcccaccattaacattgatgaattaggagtaccatggagtatt
gctctgaatctcacatatccagaaactgtgaccccttataacattgaaaggttaaaggag
cttgttgagtatgggccacatcctccacctggtaaaactggtgctaaatacatcataagg
gatgatggacaaagactcgatcttcgctacttgaagaaaagtagtgatcatcatctggag
ctcggttacaaggtggagcgtcatttaaatgatggtgactttgtcctctttaatcgtcaa
cccagtctccataaaatgtcaataatggggcacagaatcaagattatgccatattctact
ttccgcctgaacctgtcagttacttcaccatacaatgctgattttgatggtgatgaaatg
aatatgcatgtcccacaatcatttgaaactagagcagaagtattggagctaatgatggtg
cctaagtgcattgtgtcacctcaatcaaaccgacctgtaatgggaattgtacaggataca
cttttaggatgccgcaaaatcaccaagagggataccttcatagagaaggatgttttcatg
aacatcttgatgtggtgggaggatttcgatgggaaagttcctgctccaacaattgtgaag
ccacgaccactttggactgggaaacaggtttttaaccttatcatacccaagcagattaat
ttgattagaactgctgcctggcacatggattcagagagaggaatgatcactccaggggat
acattaatccgcatagaaaaaggggagctgctttctggaactctatgcaaaaaaacgctt
gggacttcttctggaagtcttatacatgtcatttgggaagaggttggcccagatgcagct
cgcaaatttttggggcatacacagtggctagtgaattattggcttttgcaaaatgctttc
agtattggaattggagataccattgctgatgcatcaacaatggaaaaaattaatgagact
atttcaaatgcaaaaaatgaggtgaaagatcttattaggaaagcacagaataaggagttg
gaggctgaacctggacggacaatgatggaatcatttgaaaacagagtgaaccaggtgttg
aataaagctcgtgatgatgcaggaagcagcgcccaaaaaagtttatctgagagtaacaat
ctcaaggcaatggtcactgctggatcgaaggggagtttcattaacatatcacagatgact
gcttgtgtggggcagcaaaatgttgagggtaagcgtataccatatggtttcattgaccgg
acgttgcctcacttcaccaaggatgattatggtccagaaagtcgtgggtttgtggagaac
tcatacttgcgtgggttaaccccacaagagttcttttttcatgccatgggtggtagggaa
ggtctcattgatactgcagtgaagacttctgaaactggctacatccagaggcgacttgtg
aaggccatggaggatattatggtcaaatatgatggtacagtaaggaactcattgggggat
gtcattcagtttctatatggggaagatggtatggattctgtctggatagaatcacaaaaa
ttggattctctcaaaatgaagaaagcagaatttgacagggtatttagatatgaatttgac
gatgaagactggaatcctacttacatgatgaccgatcacgttgaggatttgagaaatatc
agagaattgcgtgatgtgtttgatgctgaagttcaaaaacttgaagcagatagataccaa
cttggaacagaaattgccaccacaggtgataatacatggccaatgcctgttaacctcaag
aggcttatctggaatgcacagaagactttcaagattgatacaagaattggaagggtttca
gatattcacccaatggaggctgtggaagctgttgataagcttcaggagagacttaaggtt
gttcctggtgacgatctgttgagtgtggaagcccaaaaaaatgccactctcttctttgga
atcttgcttcgcagcactttggccagtaaaagggtgttgcaggaatataggctcagtcgc
gaagcatttgattgggttattggtgagatagaatcacgatttttacagtcattagttgca
ccaggtgagatgattggttgtgttgctgcacaatccattggtgagcctgctactcaaatg
accctcaatactttccactatgctggtgttagtgcaaagaatgtcactctaggtgttcct
aggttgagggaaattattaatgtagctaaaaaaataaaaacaccttcactttctgtgtac
ctgaagcctgaatttaacaagacaaaggagaaggctaaaaatgttcagtgtgctttggaa
tacaccactctccgaagtgtcacacaagcaacagaagtgtggtatgatcctgatcccatg
agtactataattgaagaggatgctgacttcgtgaagtcatactatgaaatgccagatgaa
gaggttgcaccggagaaaatatctccctggttgcttcgcatagagttgaaccgtgaaatg
atgatcgataagaagctaaacatggctgacattgctgagaagatcaatcatgagtttgat
gatgatttgacttgtatctttaatgatgacaatgctgagaaactgattcttcgtatccgt
atcatgaacgatgaagctccaaagggggagttgaatgatgaatcagctgaggatgatgtt
ttcttgaaaaagattgagagtaacatgctgactgaaatggctcttcgtggtatcccagat
atcaacaaggtgttcattaaaaatgccaaggtaagcaggtttgatgagagtgaaggattt
aagactacggaggagtggatgctggatacagagggtgtcaatctcctggctgttatgtgc
aatgaaaatgttgatgcccgaaagacaacaagcaatcacttaattgaagttatagaagtg
cttggaattgaggctgttcgtcgatccctactggatgaattgagagttgtcatatcgttt
gatggatcttatgtgaattaccggcatctggctatactgtgtgatacgatgacctaccgt
ggtcacttgatggcaatcactcgtcatggtattaatcggaatgatactgggccaatgatg
agatgctcatttgaagagactgttgacattctcctagatgctgcagtatatgctgaaaca
gattacttgaggggtgtcaccgaaaatataatgctgggccagcttgcaccaattggcact
ggatattgtgctctttatctaaacgatgagatgttgaagaatgctattgagctccagctc
cctagttatatggagggccttgattttggcatgacacctgctcgttctccagtttctggg
actccttatcatgatgggatgatgtctcccatgctgatgagtccaaatctccgcatgtca
cctactgtagatggagtggccttttcgccttatgttggtggaatggccttttctcctagt
acatctcctgcttcaacatctattggctacagcccatcatctccagtctacagtcctgga
tacagtcctacttcaccttcatacagccctgcctcaccaagttatagccccgcttcccca
aattatagcccaacttcacccacttatagtcccagttctcctagttatagcccaactagt
cctgcctattctcctacaagtccatcatactcccccacttcaccaagctacagccccact
tccccgagctacagccccacttcccccagctacagccctacttccccaagctacagcccc
acatccccaagctacagccccacatccccaagctacagccccacttcacctgcgtacagt
cccacttcacctgcatacagccccacatcacctgcatacagccccacctccccatcatac
agccccacatctccttcctacagccccacatccccatcatacagccccacatccccatcc
tacagcccaacctccccagcctatagcccaacctcccctggctacagcccaacctcgcca
agttacaacccccaatcagcaaaatacagcccatcactggcatactcacctagcagtcca
agattgtcgccagccagtccttacagtccaacatctccaaattatagcccaacatcacct
tcttattcgccaacatctccatcatattccccttcaagtccgacctacagtcctagcagt
ccatataattctggtgtcagcccagactacagcccaagttctccacagtacagtccaagt
gcaggatactcaccaagtgcccctgggtattcgccatcatctactagccaatacactcct
caaacaagtaccaagggtgacagggacaagaaggatggcaagagcactcgatga
DBGET
integrated database retrieval system
