Pseudomonas amygdali: BKM19_002875
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Entry
BKM19_002875 CDS
T05354
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
pamg
Pseudomonas amygdali
Pathway
pamg03030
DNA replication
pamg03410
Base excision repair
pamg03420
Nucleotide excision repair
pamg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pamg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BKM19_002875
03410 Base excision repair
BKM19_002875
03420 Nucleotide excision repair
BKM19_002875
03440 Homologous recombination
BKM19_002875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pamg03032
]
BKM19_002875
03400 DNA repair and recombination proteins [BR:
pamg03400
]
BKM19_002875
Enzymes [BR:
pamg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BKM19_002875
DNA replication proteins [BR:
pamg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BKM19_002875
DNA repair and recombination proteins [BR:
pamg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
BKM19_002875
NER (nucleotide excision repair)
GGR (global genome repair) factors
BKM19_002875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
AVB12663
LinkDB
All DBs
Position
complement(443101..445866)
Genome browser
AA seq
921 aa
AA seq
DB search
MTQAPLVLIDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRRQYPDSPFAVVFD
AKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPLLCVEGVEADDVIGTLAR
SSAAADRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLALM
GDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYERLETVATLPIRGAKTLAAKLEEHRAM
AFLSYELATIKIDVPLDIELDQLHCGEPDRDKLMELYAELEFKSWIEDLQRDAKRAGQEL
AVEEPTVEAKEAAYEVILEQSQFDAWLKKLNAAPLFAFVTQSNGTDAQRAQLVGLSFAIQ
THEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAKFAINLLANCALDGD
QTQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAGKGAKQLTFDQ
IAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVLAGIERQGALVD
ANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPILSKTATGQAS
TAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTG
RLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAF
RNDLDVHRATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAY
VDRYFARYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAP
MQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQISEQIRPHMSGA
AELAVPLLVEVGVGNNWDEAH
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atgacccaagcgccgctcgtcctgatagacggttcctcttacctctatcgcgccttccac
gcactgccaccactgaccacgtccaaaggattgccgacgggcgccgtcaaaggcgtgctc
aacatgctcaaaagcctgcgtcgccagtacccggacagcccgtttgcggtggtcttcgat
gccaagggcgggactttccgcgacgcgctgtataccgattacaaagccaatcggcccagc
atgccggatgacctgcgcgtgcaggtcgatctgctgcatgcttgcgtcaagggcatgggc
tatccgctgctatgcgtggaaggcgttgaagcagacgacgtgatcggcaccctggcgcgc
agcagcgcagcagcggaccgtccggtgatcatctccaccggtgacaaggacatggcgcaa
ctggtcgacgggcacatcactctggtcaacaccatgaccggcagcgtgctggacgtggct
ggcgtgaaagagaagttcggcgtcggcccggagcacatcatcgactacctcgcactgatg
ggcgacaaggtcgacaacatacctggcgtccccggcgtcggcgaaaagactgccgtcggc
ttgctggttggcgtgggcggcggaatcaaggagctttacgaacgcctcgaaacggtcgcg
accctgcctattcgtggggccaagaccctggcggccaagcttgaagagcatcgtgcgatg
gccttcctgtcctatgaactggcaactatcaagatcgacgtgccactggacatcgaactg
gaccagctgcattgcggcgagccggaccgcgacaaattgatggagctgtacgccgagctg
gaattcaaaagctggatcgaagacctgcaacgtgatgccaaacgcgccgggcaggaactg
gccgtcgaagagccaaccgtcgaggcaaaagaagccgcctatgaagtcattctcgagcag
agccagttcgacgcgtggctgaagaaactcaacgccgcgccgctgttcgccttcgtgacc
cagagcaacggcaccgacgcccagcgcgcgcaactggtaggtttgtcttttgccattcag
acccacgaagccgcctacattccgctgacccattcctacatgggggtgccgcagcaactg
gaccgcgacacggtgctcaaggcgctcaagccgctgcttgaagacccggataaaaccaag
gtcggtcaacacgccaagttcgctatcaacctgcttgccaactgcgcgctcgacggcgat
cagacccaaggcatcgacctgcagggcgtcaggttcgacactattctggagtcctacgtt
ctggattccactgccacccgccacgaccgcgacagcctggtggcgaagtacctgacgcac
acgccgatcaacttccaggagatcgccggcaaaggcgccaagcaactgaccttcgaccag
atcgccatcgagcaggctggcaattacgcagccgaagaagccgacctgaccctgcgcctg
catgaagtcttcgaagcgcgtctggccgcaattccaaccctgcagccggtcttgaacgac
atcgagatgccgctggtgcccgtcctggcaggtatcgaacgccagggcgcactggtcgat
gccaacctgctgggcatccagagcgtcgaactgggcgacaagatgaccgcgctggagcgc
gaagccttcgccattgccggtgaagagttcaacctgggctcgcccaagcagcttggcgtg
attctctacgaaaaactcggcatgccgatcctcagcaagaccgccaccggccaggcatcg
actgccgaggccgtgctggccgaactcgccgagcaggacttcccgctgcccaaggtactg
atgcaataccgctcgatgagcaagctcaagagcacttacaccgaccgcctgccggagcag
atcaacccgcgcaccggacgcattcacacctcctatcaccaggcagtggcggtgaccggg
cgcttgtcatccagcgatccgaacctgcagaacatcccgatccgtactgctgaaggccga
cgcatccgtcaggcgttcgtggcccccaagggctacaagctgctggcggcagactattcg
cagatcgaactgcgcatcatggcgcatctggcacaggacgaaggcttgctgcatgccttc
cgcaacgacctggacgttcaccgcgcgacggcagcggaagtcttcggcgtcgagctggaa
aacgtcaccacggacatgcgccgcagcgccaaggcgatcaacttcggcctgatctacggc
atgagcgcgtttggcctggccaaacagattggcgtggaccgcaagcagtcacaggcttat
gtcgaccgttacttcgcccgctaccccggcgtgctggattacatggagcgcacacgtgct
caggccgccgagcagggttttgtcgagaccattttcggccgtcgcctgtacttgccggac
atcaacgccaagaaccagtccctgcgcaaaggtgccgaacgcatggcgatcaacgcgccg
atgcaaggcactgcggcggacatcatcaagaaagccatggtggccgtgaatggctggctg
gaagaatccggtctggatgcgcgggtcattctgcaggtgcatgacgaactggtgctggag
gtgcgcgaagacctggtcgatcagatcagtgaacagatccgcccacacatgagtggcgca
gcagaattggcagtgccgctgctggtggaagtcggggtcggcaacaactgggacgaggcg
cactga
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