Pseudomonas amygdali: BKM19_027930
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Entry
BKM19_027930 CDS
T05354
Name
(GenBank) tRNA 4-thiouridine(8) synthase ThiI
KO
K03151
tRNA uracil 4-sulfurtransferase [EC:
2.8.1.4
]
Organism
pamg
Pseudomonas amygdali
Pathway
pamg00730
Thiamine metabolism
pamg01100
Metabolic pathways
pamg01240
Biosynthesis of cofactors
pamg04122
Sulfur relay system
Brite
KEGG Orthology (KO) [BR:
pamg00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00730 Thiamine metabolism
BKM19_027930
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04122 Sulfur relay system
BKM19_027930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pamg03016
]
BKM19_027930
Enzymes [BR:
pamg01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.1 Sulfurtransferases
2.8.1.4 tRNA uracil 4-sulfurtransferase
BKM19_027930
Transfer RNA biogenesis [BR:
pamg03016
]
Prokaryotic type
tRNA modification factors
Other tRNA modification factors
BKM19_027930
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Gene cluster
GFIT
Motif
Pfam:
ThiI
THUMP
QueC
Rhodanese
tRNA_Me_trans
Motif
Other DBs
NCBI-ProteinID:
AVB16966
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Position
complement(5716402..5717856)
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AA seq
484 aa
AA seq
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MKLIVKVFPEITIKSPPVRKKFIRQLGKNIRTVLRELDADIVVGGVWDNLEVETRQTDPK
VLQGIRDRLSCMPGIANFLQVAEYPLGDMDDIVAKCKLHYADLLPGKMFSVRCKRAGRHD
FSSMDVEKYVGSKLRMQCGAAGIELKKPDLVVRMEIRDQRLFVVHDQHQGMGGYPLGALE
QTLVLMSGGFDSTVAAYQIMRRGLMAHFCFFNLGGRAHELGVMEVAHFIWKKYGSSQRVL
FVSVPFEEVLGEILQKVDNSHMGVVLKRMMLRAASAVADRLEIDVLVTGEAISQVASQTL
PNLSLIDAATDKLVLRPLVASHKQDIVDLATEIGTADFARHMPEYCGVISVNPKTNAKRN
RVEYEEKQFDMAILEQALERAKLISIDRVIDDLSRNVDIEEVSQALAGQVIIDIRHPDAQ
EDQPLQVPGVEIQTLPFYALNSRFKALDDTRQYLLYCDKGVMSRLHAHHLLSEGHANVRV
YRPS
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgaaactaatcgttaaagtttttccagaaatcaccattaaaagcccgccggtgcgcaag
aaattcatccggcaactgggcaagaacattcgtaccgtgctccgtgaactggacgcggac
attgtcgtgggtggcgtatgggacaaccttgaggtggagacccgccagaccgaccccaaa
gtgctgcagggcatcagggaccggctaagttgcatgcccggcattgccaactttctgcag
gtggccgagtacccgttgggcgacatggatgacatcgttgccaagtgcaaactgcactac
gccgacctgctgcccggcaagatgttttcagtgcgttgcaagcgcgccggtcgccacgat
ttcagctcgatggatgtcgagaaatacgtcggtagcaagttgcgcatgcaatgcggtgct
gccggaatcgagctgaaaaagcccgatcttgtcgtacggatggaaattcgcgaccaacgg
ttgtttgtcgttcatgaccagcaccagggcatgggcggctacccgctgggtgcgctggag
cagaccctggtattgatgtccggcggtttcgattcgaccgttgcggcctaccagatcatg
cgccgcggccttatggcgcacttctgcttcttcaatctgggcggaagagcccatgaactg
ggcgtgatggaagtcgctcactttatctggaagaagtacggcagttcgcagcgggtgctg
tttgtcagcgtgccattcgaggaagttctcggagaaattctgcagaaagtcgataacagt
catatgggtgtagttttgaagcgtatgatgttacgcgctgcatccgccgtggctgatcgt
ctcgaaatcgacgtgctggtaactggcgaagcgatttcacaggttgccagccagacgctg
ccaaacctgtcgctgatcgacgcggctacagacaagctggtcctgcgaccgctggtcgcg
agccacaagcaagacatcgtggacctggcgactgaaataggcactgccgactttgcccgc
cacatgcctgagtattgcggggtgatttcggtcaacccgaagaccaacgccaagcgaaat
cgcgttgagtacgaagaaaaacagttcgacatggcgattctcgagcaagcgcttgaacgc
gcgaagctgatttcgatcgatcgggtgatcgacgatctgagccgcaatgtcgacatagaa
gaagtcagccaggcgctggccggtcaggtcatcatcgacatccgtcacccggatgcccag
gaggaccagccgctgcaagtgcctggcgtggagatacagacgttgccgttctacgcattg
aacagccgtttcaaggcactggatgacacgcgccagtaccttttgtattgcgacaaaggc
gtcatgagtcgcctgcatgctcaccatttgctcagtgaggggcatgccaatgtgcgcgtt
tatcgaccgagctaa
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