Polynucleobacter antarcticus: DCO16_08480
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Entry
DCO16_08480 CDS
T08332
Symbol
rfaD
Name
(GenBank) ADP-glyceromanno-heptose 6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
pani
Polynucleobacter antarcticus
Pathway
pani00540
Lipopolysaccharide biosynthesis
pani01100
Metabolic pathways
pani01250
Biosynthesis of nucleotide sugars
Module
pani_M00064
ADP-L-glycero-D-manno-heptose biosynthesis
Brite
KEGG Orthology (KO) [BR:
pani00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
DCO16_08480 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
pani01005
]
DCO16_08480 (rfaD)
Enzymes [BR:
pani01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
DCO16_08480 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
pani01005
]
Core region
DCO16_08480 (rfaD)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
3Beta_HSD
RmlD_sub_bind
NAD_binding_4
Polysacc_synt_2
NAD_binding_10
KR
adh_short
DapB_N
Motif
Other DBs
NCBI-ProteinID:
QKM63085
UniProt:
A0A6M9PWD8
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Position
complement(1635594..1636613)
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AA seq
339 aa
AA seq
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MTIIVTGAAGFIGANIVQALNARGEKNIIAVDDLRPADKYRNLADLDIIDYVDKDEFLEA
FRGGRFGKVKAVFHEGACSDTMETDGIFMMANNYRYTMDLLDICTEQKVQLLYASSAATY
GGSDTFIESREHEKPLNIYGYSKFLFDQVMRKRFAEKSNTAQVVGFRYFNVYGPRESHKG
RMASVAFHQYHQYKASGQVKLFGEYGGYAAGEQSRDFVSVEDVVKVNLFFLDHPEVSGIF
NLGSGRAQPFNDVAHAVANAMRKINQANPASLQELVKEKVIEYIPFPDALKGKYQCFTQA
DLTKLRAAGYAEPFLNVEQGVSRYVTWLSANTDFLASPL
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atgaccattatcgttacgggcgctgcaggttttattggcgccaatattgttcaagcactc
aatgcccgtggcgagaaaaatatcatcgctgtggatgatcttcgtccggcagataagtat
cgcaatctagccgatctggacattattgattatgttgataaagatgagtttctagaagct
tttagaggcgggcgtttcggtaaggtaaaggcagtgtttcatgagggagcttgttcagac
accatggaaacggatgggatttttatgatggcgaataactatcgctacaccatggatctc
ttagatatctgcaccgagcaaaaagtacagctcctgtacgcctcatctgctgctacgtat
ggtggttcagatacctttatcgagagtcgcgaacatgagaagccacttaatatttatggt
tactcaaagtttttatttgatcaggtgatgcgtaagcgctttgcggaaaaatccaatact
gctcaggtagtaggctttcgttactttaatgtgtatggcccaagagagtcccataaggga
cgtatggcctctgtagcctttcatcaatatcaccaatacaaggccagtgggcaagtcaaa
ctctttggtgaatacggtggatatgcagcaggcgagcaatctcgtgactttgtgtcggta
gaagatgtcgtgaaagttaacctcttttttctagatcatcctgaagtcagtggcatattc
aatcttggtagtggtcgcgcacagccatttaatgatgttgcacatgcagtggcaaatgct
atgcgtaaaattaatcaagcaaaccctgctagcctccaagaattagtcaaagaaaaagta
attgagtacattccttttccggatgctctcaagggcaaatatcaatgctttacccaagcc
gatttaacaaaattgcgcgctgcagggtatgcagagcccttcctgaatgtagagcagggt
gtcagtcgatatgttacttggctatcagccaatacagatttcttagcgagtccactctag
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