KEGG   PATHWAY: acry00020
Entry
acry00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Arthrobacter crystallopoietes
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
acry00020  Citrate cycle (TCA cycle)
acry00020

Module
acry_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:acry00020]
acry_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:acry00020]
acry_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:acry00020]
acry_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:acry00020]
acry_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:acry00020]
Other DBs
GO: 0006099
Organism
Arthrobacter crystallopoietes [GN:acry]
Gene
AC20117_00725  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
AC20117_11370  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
AC20117_17640  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
AC20117_13475  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
AC20117_21855  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
AC20117_17485  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AC20117_10890  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
AC20117_10885  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
AC20117_13695  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AC20117_05860  succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
AC20117_13690  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
AC20117_13705  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
AC20117_13700  succinate dehydrogenase [KO:K00242]
AC20117_13960  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
AC20117_21325  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
AC20117_17195  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
AC20117_10175  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
AC20117_05960  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
AC20117_19975  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
AC20117_04675  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
AC20117_04680  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
AC20117_04685  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
AC20117_17480  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
acry00010  Glycolysis / Gluconeogenesis
acry00053  Ascorbate and aldarate metabolism
acry00061  Fatty acid biosynthesis
acry00071  Fatty acid degradation
acry00190  Oxidative phosphorylation
acry00220  Arginine biosynthesis
acry00250  Alanine, aspartate and glutamate metabolism
acry00280  Valine, leucine and isoleucine degradation
acry00350  Tyrosine metabolism
acry00470  D-Amino acid metabolism
acry00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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