KEGG   PATHWAY: aflv00020
Entry
aflv00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Alteriqipengyuania flavescens
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aflv00020  Citrate cycle (TCA cycle)
aflv00020

Module
aflv_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:aflv00020]
aflv_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:aflv00020]
aflv_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:aflv00020]
aflv_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:aflv00020]
aflv_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:aflv00020]
Other DBs
GO: 0006099
Organism
Alteriqipengyuania flavescens [GN:aflv]
Gene
QQW98_11075  citrate synthase [KO:K01647] [EC:2.3.3.1]
QQW98_07275  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
QQW98_10285  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
QQW98_10000  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
QQW98_09995  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
QQW98_09990  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QQW98_11515  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QQW98_10845  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
QQW98_10850  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
QQW98_10010  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
QQW98_04700  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
QQW98_10790  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
QQW98_12670  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
QQW98_10780  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
QQW98_10785  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
QQW98_05155  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
QQW98_10015  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
QQW98_01045  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
QQW98_11190  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
QQW98_11195  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
QQW98_11530  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aflv00010  Glycolysis / Gluconeogenesis
aflv00053  Ascorbate and aldarate metabolism
aflv00061  Fatty acid biosynthesis
aflv00071  Fatty acid degradation
aflv00190  Oxidative phosphorylation
aflv00220  Arginine biosynthesis
aflv00250  Alanine, aspartate and glutamate metabolism
aflv00280  Valine, leucine and isoleucine degradation
aflv00350  Tyrosine metabolism
aflv00470  D-Amino acid metabolism
aflv00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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