KEGG   PATHWAY: agif00020
Entry
agif00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Aphidius gifuensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
agif00020  Citrate cycle (TCA cycle)
agif00020

Module
agif_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:agif00020]
agif_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:agif00020]
agif_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:agif00020]
agif_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:agif00020]
agif_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:agif00020]
Other DBs
GO: 0006099
Organism
Aphidius gifuensis [GN:agif]
Gene
122859243  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
122849959  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
122850348  LOW QUALITY PROTEIN: ATP-citrate synthase-like [KO:K01648] [EC:2.3.3.8]
122849010  cytoplasmic aconitate hydratase-like [KO:K01681] [EC:4.2.1.3]
122860919  probable aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
122853146  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
122849026  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
122851236  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
122859121  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
122861171  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
122848057  2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
122854781  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
122848703  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
122860045  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
122854329  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
122857659  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
122860566  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
122860567  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
122848439  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
122848933  succinate dehydrogenase [ubiquinone] iron-sulfur subunit-like [KO:K00235] [EC:1.3.5.1]
122859564  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
122860359  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
122847578  probable fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
122852345  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
122848299  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
122853036  malate dehydrogenase-like [KO:K00026] [EC:1.1.1.37]
122854620  pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
122856766  phosphoenolpyruvate carboxykinase [GTP]-like [KO:K01596] [EC:4.1.1.32]
122854488  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
122857826  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
122858113  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
122855471  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
agif00010  Glycolysis / Gluconeogenesis
agif00053  Ascorbate and aldarate metabolism
agif00061  Fatty acid biosynthesis
agif00062  Fatty acid elongation
agif00071  Fatty acid degradation
agif00190  Oxidative phosphorylation
agif00220  Arginine biosynthesis
agif00250  Alanine, aspartate and glutamate metabolism
agif00280  Valine, leucine and isoleucine degradation
agif00350  Tyrosine metabolism
agif00470  D-Amino acid metabolism
agif00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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