KEGG   PATHWAY: aoz00020
Entry
aoz00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Azospirillum oryzae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aoz00020  Citrate cycle (TCA cycle)
aoz00020

Module
aoz_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:aoz00020]
aoz_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:aoz00020]
aoz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:aoz00020]
aoz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:aoz00020]
aoz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:aoz00020]
Other DBs
GO: 0006099
Organism
Azospirillum oryzae [GN:aoz]
Gene
HUE56_18175  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
HUE56_22405  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
HUE56_07745  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
HUE56_12445  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
HUE56_03590  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
HUE56_18540  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HUE56_18575  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HUE56_11825  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
HUE56_11820  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
HUE56_12080  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HUE56_16970  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HUE56_27325  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
HUE56_11830  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
HUE56_27320  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
HUE56_11835  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
HUE56_05115  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
HUE56_26080  FAD-binding protein [KO:K00239] [EC:1.3.5.1]
HUE56_11135  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HUE56_11140  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
HUE56_11125  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
HUE56_11130  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
HUE56_28700  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
HUE56_15755  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HUE56_11840  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HUE56_10120  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
HUE56_28725  transketolase [KO:K00163] [EC:1.2.4.1]
HUE56_25615  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
HUE56_16950  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
HUE56_16955  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
HUE56_19705  acetoin dehydrogenase dihydrolipoyllysine-residue acetyltransferase subunit [KO:K00627] [EC:2.3.1.12]
HUE56_25625  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
HUE56_16960  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
HUE56_03645  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aoz00010  Glycolysis / Gluconeogenesis
aoz00053  Ascorbate and aldarate metabolism
aoz00061  Fatty acid biosynthesis
aoz00071  Fatty acid degradation
aoz00190  Oxidative phosphorylation
aoz00220  Arginine biosynthesis
aoz00250  Alanine, aspartate and glutamate metabolism
aoz00280  Valine, leucine and isoleucine degradation
aoz00350  Tyrosine metabolism
aoz00470  D-Amino acid metabolism
aoz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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