KEGG   PATHWAY: aqu00020
Entry
aqu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Amphimedon queenslandica (sponge)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aqu00020  Citrate cycle (TCA cycle)
aqu00020

Module
aqu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:aqu00020]
aqu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:aqu00020]
aqu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:aqu00020]
aqu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:aqu00020]
Other DBs
GO: 0006099
Organism
Amphimedon queenslandica (sponge) [GN:aqu]
Gene
100637505  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
100640666  ATP-citrate synthase-like [KO:K01648] [EC:2.3.3.8]
100637751  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
100634468  cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
100636618  isocitrate dehydrogenase [NADP] cytoplasmic-like [KO:K00031] [EC:1.1.1.42]
100635555  isocitrate dehydrogenase [NAD] subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
100636381  isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
100632637  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
100637224  2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
100633634  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
100633762  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
100640270  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
100641457  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
100634721  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
100639406  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial-like isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
100632409  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
100632374  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
100633388  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
100633514  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial-like [KO:K00237]
100635680  fumarate hydratase, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
100639823  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
100641593  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
100634531  phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
100631462  pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
100631470  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
100634474  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aqu00010  Glycolysis / Gluconeogenesis
aqu00053  Ascorbate and aldarate metabolism
aqu00061  Fatty acid biosynthesis
aqu00062  Fatty acid elongation
aqu00071  Fatty acid degradation
aqu00190  Oxidative phosphorylation
aqu00220  Arginine biosynthesis
aqu00250  Alanine, aspartate and glutamate metabolism
aqu00280  Valine, leucine and isoleucine degradation
aqu00350  Tyrosine metabolism
aqu00470  D-Amino acid metabolism
aqu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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