KEGG   PATHWAY: atr01200
Entry
atr01200                    Pathway                                
Name
Carbon metabolism - Amborella trichopoda
Description
Carbon metabolism is the most basic aspect of life. This map presents an overall view of central carbon metabolism, where the number of carbons is shown for each compound denoted by a circle, excluding a cofactor (CoA, CoM, THF, or THMPT) that is replaced by an asterisk. The map contains carbon utilization pathways of glycolysis (map00010), pentose phosphate pathway (map00030), and citrate cycle (map00020), and six known carbon fixation pathways (map00710 and map00720) as well as some pathways of methane metabolism (map00680). The six carbon fixation pathways are: (1) reductive pentose phosphate cycle (Calvin cycle) in plants and cyanobacteria that perform oxygenic photosynthesis, (2) reductive citrate cycle in photosynthetic green sulfur bacteria and some chemolithoautotrophs, (3) 3-hydroxypropionate bi-cycle in photosynthetic green nonsulfur bacteria, two variants of 4-hydroxybutyrate pathways in Crenarchaeota called (4) hydroxypropionate-hydroxybutyrate cycle and (5) dicarboxylate-hydroxybutyrate cycle, and (6) reductive acetyl-CoA pathway in methanogenic bacteria.
Class
Pathway map
atr01200  Carbon metabolism
atr01200

Module
atr_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:atr01200]
atr_M00002  Glycolysis, core module involving three-carbon compounds [PATH:atr01200]
atr_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:atr01200]
atr_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:atr01200]
atr_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:atr01200]
atr_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:atr01200]
atr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:atr01200]
atr_M00012  Glyoxylate cycle [PATH:atr01200]
atr_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:atr01200]
atr_M00021  Cysteine biosynthesis, serine => cysteine [PATH:atr01200]
atr_M00165  Reductive pentose phosphate cycle (Calvin cycle) [PATH:atr01200]
atr_M00168  CAM (Crassulacean acid metabolism), dark [PATH:atr01200]
atr_M00169  CAM (Crassulacean acid metabolism), light [PATH:atr01200]
atr_M00170  C4-dicarboxylic acid cycle, phosphoenolpyruvate carboxykinase type [PATH:atr01200]
atr_M00171  C4-dicarboxylic acid cycle, NAD - malic enzyme type [PATH:atr01200]
atr_M00172  C4-dicarboxylic acid cycle, NADP - malic enzyme type [PATH:atr01200]
atr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:atr01200]
atr_M00532  Photorespiration [PATH:atr01200]
atr_M00621  Glycine cleavage system [PATH:atr01200]
Organism
Amborella trichopoda [GN:atr]
KO pathway
ko01200   
LinkDB

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