KEGG   PATHWAY: babo00020
Entry
babo00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Brucella abortus bv. 2 86/8/59
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
babo00020  Citrate cycle (TCA cycle)
babo00020

Module
babo_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:babo00020]
babo_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:babo00020]
babo_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:babo00020]
babo_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:babo00020]
babo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:babo00020]
Other DBs
GO: 0006099
Organism
Brucella abortus bv. 2 86/8/59 [GN:babo]
Gene
DK55_1153  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
DK55_111  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
DK55_1199  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
DK55_1866  sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
DK55_1865  sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
DK55_1861  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DK55_2678  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DK55_1133  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DK55_1867  sucD; succinate-CoA ligase, alpha subunit [KO:K01902] [EC:6.2.1.5]
DK55_1868  sucC; succinate-CoA ligase, beta subunit [KO:K01903] [EC:6.2.1.5]
DK55_1061  succinate CoA transferase family protein [KO:K18118] [EC:2.8.3.18]
DK55_1845  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DK55_1844  succinate dehydrogenase and fumarate reductase iron-sulfur family protein [KO:K00240] [EC:1.3.5.1]
DK55_1847  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
DK55_1846  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
DK55_964  hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein [KO:K01676] [EC:4.2.1.2]
DK55_2183  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
DK55_1869  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
DK55_1734  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
DK55_2024  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
DK55_1136  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
DK55_1135  hypothetical protein [KO:K00162] [EC:1.2.4.1]
DK55_3142  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
DK55_1134  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
babo00010  Glycolysis / Gluconeogenesis
babo00053  Ascorbate and aldarate metabolism
babo00061  Fatty acid biosynthesis
babo00071  Fatty acid degradation
babo00190  Oxidative phosphorylation
babo00220  Arginine biosynthesis
babo00250  Alanine, aspartate and glutamate metabolism
babo00280  Valine, leucine and isoleucine degradation
babo00350  Tyrosine metabolism
babo00470  D-Amino acid metabolism
babo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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